CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0114400

Gene name
Homology with Arabidopsis Similar to At1g33890: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (HF=5e+0)

Module size 27 genes

NF 0.43

%ile 53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.87 Os04g0114400 9632.m00150 - - 5e+0 At1g33890 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative O.I. H.G. S.X.
0.78 93.4 0.89 Os07g0263300 XM_354251.1 - Hypothetical protein 2e+1 At5g65158 - O.I. H.G. S.X.
0.72 89.8 0.87 Os06g0354225 9634.m02436 - - 6e+0 At3g28917 MIF2 (MINI ZINC FINGER 2) O.I. H.G. S.X.
0.63 82.7 0.89 Os08g0277400 9636.m01763 - - 5e+0 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) O.I. H.G. S.X.
0.60 79.7 0.92 Os02g0286400 9630.m01747 - - 1e-1 At3g57670 NTT (NO TRANSMITTING TRACT) O.I. H.G. S.X.
0.58 77.0 0.93 Os07g0475300 9635.m02850 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.57 77.0 0.90 Os09g0329332 9637.m01338 - - 2e+0 At1g26796 - O.I. H.G. S.X.
0.57 77.0 0.92 Os04g0143200 9632.m00488 - - 4e+0 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) O.I. H.G. S.X.
0.55 73.7 0.89 Os11g0229600 AK111854.1 - Conserved hypothetical protein 2e+0 At4g33690 unknown protein O.I. H.G. S.X.
0.55 73.7 0.92 Os02g0796800 9630.m05501 - - 9e+0 At4g37200 HCF164 O.I. H.G. S.X.
0.55 73.7 0.93 Os09g0426200 9637.m02236 - - 1e+0 At3g48490 unknown protein O.I. H.G. S.X.
0.52 69.6 0.96 Os02g0508600 9630.m02923 - - 2e+0 At3g17420 GPK1 O.I. H.G. S.X.
0.52 69.6 0.95 Os12g0520100 9640.m03244 - - 7e-1 At2g36080 DNA-binding protein, putative O.I. H.G. S.X.
0.45 58.8 0.94 Os10g0108200 9638.m00090 - - 3e+0 At5g66090 unknown protein O.I. H.G. S.X.
0.42 53.9 0.94 Os11g0460500 AK106953.1 - TPR-like domain containing protein 2e-1 At1g07690 unknown protein O.I. H.G. S.X.
0.41 52.4 0.94 Os03g0605666 9631.m03929 - - 5e-1 At1g35181 unknown protein O.I. H.G. S.X.
0.38 46.9 0.94 Os05g0549200 9632.m02188 - - 5e-1 At3g15260 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.38 46.9 0.92 Os08g0313800 9636.m02165 - - 3e-1 At3g46090 ZAT7 O.I. H.G. S.X.
0.38 46.9 0.89 Os12g0220300 9640.m01132 - - 4e+0 At5g27541 - O.I. H.G. S.X.
0.37 45.0 0.93 Os12g0539500 9640.m03427 - - 1e-1 At3g05000 transport protein particle (TRAPP) component Bet3 family protein O.I. H.G. S.X.
0.37 45.0 0.94 Os10g0429300 9638.m02507 - MATH domain containing protein 2e+0 At2g34870 MEE26 (maternal effect embryo arrest 26) O.I. H.G. S.X.
0.36 44.0 0.89 Os09g0435800 9637.m02313 - - 2e-1 At3g48700 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) O.I. H.G. S.X.
0.31 34.5 0.90 Os09g0373600 9637.m01774 - - 3e-1 At5g57150 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.29 31.1 0.92 Os01g0578200 NM_192977.1 - Zn-finger, MYND type domain containing protein 2e-3 At4g02220 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein O.I. H.G. S.X.
0.24 22.4 0.92 Os04g0347400 9632.m02641 - - 1e+1 At5g53030 unknown protein O.I. H.G. S.X.
0.23 21.2 0.91 Os04g0420700 9632.m03299 - - 5e-2 At2g35430 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.16 11.3 0.90 Os08g0370000 9636.m02796 - - 2e-1 At5g54410 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.87	Os04g0114400	9632.m00150	-	-	5e+0	At1g33890	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	O.I.	H.G.	S.X.
0.78	93.4	0.89	Os07g0263300	XM_354251.1	-	Hypothetical protein	2e+1	At5g65158	-	O.I.	H.G.	S.X.
0.72	89.8	0.87	Os06g0354225	9634.m02436	-	-	6e+0	At3g28917	MIF2 (MINI ZINC FINGER 2)	O.I.	H.G.	S.X.
0.63	82.7	0.89	Os08g0277400	9636.m01763	-	-	5e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	O.I.	H.G.	S.X.
0.60	79.7	0.92	Os02g0286400	9630.m01747	-	-	1e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.
0.58	77.0	0.93	Os07g0475300	9635.m02850	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.57	77.0	0.90	Os09g0329332	9637.m01338	-	-	2e+0	At1g26796	-	O.I.	H.G.	S.X.
0.57	77.0	0.92	Os04g0143200	9632.m00488	-	-	4e+0	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	O.I.	H.G.	S.X.
0.55	73.7	0.89	Os11g0229600	AK111854.1	-	Conserved hypothetical protein	2e+0	At4g33690	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.92	Os02g0796800	9630.m05501	-	-	9e+0	At4g37200	HCF164	O.I.	H.G.	S.X.
0.55	73.7	0.93	Os09g0426200	9637.m02236	-	-	1e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.96	Os02g0508600	9630.m02923	-	-	2e+0	At3g17420	GPK1	O.I.	H.G.	S.X.
0.52	69.6	0.95	Os12g0520100	9640.m03244	-	-	7e-1	At2g36080	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.45	58.8	0.94	Os10g0108200	9638.m00090	-	-	3e+0	At5g66090	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os11g0460500	AK106953.1	-	TPR-like domain containing protein	2e-1	At1g07690	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.94	Os03g0605666	9631.m03929	-	-	5e-1	At1g35181	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.94	Os05g0549200	9632.m02188	-	-	5e-1	At3g15260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.38	46.9	0.92	Os08g0313800	9636.m02165	-	-	3e-1	At3g46090	ZAT7	O.I.	H.G.	S.X.
0.38	46.9	0.89	Os12g0220300	9640.m01132	-	-	4e+0	At5g27541	-	O.I.	H.G.	S.X.
0.37	45.0	0.93	Os12g0539500	9640.m03427	-	-	1e-1	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.
0.37	45.0	0.94	Os10g0429300	9638.m02507	-	MATH domain containing protein	2e+0	At2g34870	MEE26 (maternal effect embryo arrest 26)	O.I.	H.G.	S.X.
0.36	44.0	0.89	Os09g0435800	9637.m02313	-	-	2e-1	At3g48700	ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)	O.I.	H.G.	S.X.
0.31	34.5	0.90	Os09g0373600	9637.m01774	-	-	3e-1	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.29	31.1	0.92	Os01g0578200	NM_192977.1	-	Zn-finger, MYND type domain containing protein	2e-3	At4g02220	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein	O.I.	H.G.	S.X.
0.24	22.4	0.92	Os04g0347400	9632.m02641	-	-	1e+1	At5g53030	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.91	Os04g0420700	9632.m03299	-	-	5e-2	At2g35430	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.16	11.3	0.90	Os08g0370000	9636.m02796	-	-	2e-1	At5g54410	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
45.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
52.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
45.0	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
39.7	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.2	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os04g0114400
Gene name
Homology with Arabidopsis	Similar to At1g33890: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (HF=5e+0)
Module size	27 genes
NF	0.43
%ile	53.2

Co-expression analysis

Gene ID Os04g0114400 Gene name Homology with ArabidopsisSimilar to At1g33890: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (HF=5e+0) Module size 27 genes NF 0.43 %ile 53.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0114400

Gene name
Homology with Arabidopsis Similar to At1g33890: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (HF=5e+0)

Module size 27 genes

NF 0.43

%ile 53.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays