Co-expression analysis

Gene ID Os04g0107700
Gene name
Homology with ArabidopsisSimilar to At3g19400: cysteine proteinase, putative (HF=3e-3)
Module size 6 genes
NF 0.29
%ile 30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.66Os04g0107700AK110974.1-Peptidase C1A, papain family protein3e-3At3g19400cysteine proteinase, putativeO.I.H.G.S.X.
0.6079.70.72Os04g01962009632.m01071-O-methyltransferase, family 2 domain containingprotein1e-1At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)O.I.H.G.S.X.
0.5068.00.70Os03g0404800AK099537.1-3-beta hydroxysteroid dehydrogenase/isomerasefamily protein4e-2At1g47290AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)O.I.H.G.S.X.
0.3134.50.76Os05g0365600CB096565-Hydroxyisourate hydrolase2e+0At3g60130BGLU16 (BETA GLUCOSIDASE 16)O.I.H.G.S.X.
0.3032.70.71Os06g01923009634.m00877--3e-1At1g64340unknown proteinO.I.H.G.S.X.
0.094.90.70Os11g0439600AK069955.1-Nod factor binding lectin-nucleotidephosphohydrolase2e-1At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.999.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.698.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.298.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
14.398.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.498.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0006527The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.Link to AmiGO
0.2221GO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.Link to AmiGO
0.1821GO:0008295The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.12475.1.S1_at, orthologous to the query gene, Os04g0107700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.8Zm.12475.1.S1_atAt3g19400--8e-1At3g54940-O.I.H.G.S.X.
0.3641.3Zm.15296.1.S1_atAt3g19400hypothetical protein LOC100279215-2e-1At1g06590unknown proteinO.I.H.G.S.X.
0.3538.9ZmAffx.489.1.A1_atAt3g19400Hypothetical protein LOC100216860-3e+0At2g07340prefoldin-related KE2 family proteinO.I.H.G.S.X.
0.3336.0ZmAffx.737.1.A1_atAt3g19400ras-related protein Rab11C /// ras-related protein Rab11C-8e-1At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.3233.4Zm.12542.1.A1_atAt3g19400--1e+0At1g09810ECT11 (evolutionarily conserved C-terminal region 11)O.I.H.G.S.X.
0.2928.1RPTR-Zm-AB076373-1_atAt3g19400--O.I.H.G.S.X.
0.2928.1ZmAffx.560.1.A1_atAt3g19400--5e-1At1g21480exostosin family proteinO.I.H.G.S.X.
0.2724.6ZmAffx.1128.1.S1_atAt3g19400--8e-7At4g24800MA3 domain-containing proteinO.I.H.G.S.X.
0.2419.8Zm.4311.1.S1_atAt3g19400--1e-31At1g29880glycyl-tRNA synthetase / glycine--tRNA ligaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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