CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0107700

Gene name
Homology with Arabidopsis Similar to At3g19400: cysteine proteinase, putative (HF=3e-3)

Module size 6 genes

NF 0.29

%ile 30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.66 Os04g0107700 AK110974.1 - Peptidase C1A, papain family protein 3e-3 At3g19400 cysteine proteinase, putative O.I. H.G. S.X.
0.60 79.7 0.72 Os04g0196200 9632.m01071 - O-methyltransferase, family 2 domain containingprotein 1e-1 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.50 68.0 0.70 Os03g0404800 AK099537.1 - 3-beta hydroxysteroid dehydrogenase/isomerasefamily protein 4e-2 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) O.I. H.G. S.X.
0.31 34.5 0.76 Os05g0365600 CB096565 - Hydroxyisourate hydrolase 2e+0 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) O.I. H.G. S.X.
0.30 32.7 0.71 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein O.I. H.G. S.X.
0.09 4.9 0.70 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.3 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006527 The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
0.222 1 GO:0006879 Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
0.182 1 GO:0008295 The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.

Inter-species module comparison

A co-expression module including the soybean gene, Gma.12150.1.S1_at, orthologous to the query gene, Os04g0107700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 Gma.12150.1.S1_at At3g19400 cysteine proteinase - 5e-11 At3g48340 cysteine-type endopeptidase/ cysteine-type peptidase O.I. H.G. S.X.
0.71 87.8 Gma.4591.1.S1_at At3g19400 cysteine proteinase - 5e-14 At5g50260 cysteine proteinase, putative O.I. H.G. S.X.
0.26 33.9 GmaAffx.69855.1.A1_at At3g19400 - - 7e-8 At4g28530 anac074 (Arabidopsis NAC domain containing protein 74) O.I. H.G. S.X.
0.15 18.7 Gma.3668.3.S1_a_at At3g19400 - - 2e-8 At1g77330 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative O.I. H.G. S.X.
0.07 10.2 Gma.3668.3.S1_at At3g19400 - - 2e-8 At1g77330 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative O.I. H.G. S.X.
0.03 5.8 GmaAffx.36153.1.S1_at At3g19400 - - 9e-2 At1g09460 glucan endo-1,3-beta-glucosidase-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage