CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0107700

Gene name
Homology with Arabidopsis Similar to At3g19400: cysteine proteinase, putative (HF=3e-3)

Module size 6 genes

NF 0.29

%ile 30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.66 Os04g0107700 AK110974.1 - Peptidase C1A, papain family protein 3e-3 At3g19400 cysteine proteinase, putative O.I. H.G. S.X.
0.60 79.7 0.72 Os04g0196200 9632.m01071 - O-methyltransferase, family 2 domain containingprotein 1e-1 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.50 68.0 0.70 Os03g0404800 AK099537.1 - 3-beta hydroxysteroid dehydrogenase/isomerasefamily protein 4e-2 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) O.I. H.G. S.X.
0.31 34.5 0.76 Os05g0365600 CB096565 - Hydroxyisourate hydrolase 2e+0 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) O.I. H.G. S.X.
0.30 32.7 0.71 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein O.I. H.G. S.X.
0.09 4.9 0.70 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	82.7	0.66	Os04g0107700	AK110974.1	-	Peptidase C1A, papain family protein	3e-3	At3g19400	cysteine proteinase, putative	O.I.	H.G.	S.X.
0.60	79.7	0.72	Os04g0196200	9632.m01071	-	O-methyltransferase, family 2 domain containingprotein	1e-1	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.
0.50	68.0	0.70	Os03g0404800	AK099537.1	-	3-beta hydroxysteroid dehydrogenase/isomerasefamily protein	4e-2	At1g47290	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)	O.I.	H.G.	S.X.
0.31	34.5	0.76	Os05g0365600	CB096565	-	Hydroxyisourate hydrolase	2e+0	At3g60130	BGLU16 (BETA GLUCOSIDASE 16)	O.I.	H.G.	S.X.
0.30	32.7	0.71	Os06g0192300	9634.m00877	-	-	3e-1	At1g64340	unknown protein	O.I.	H.G.	S.X.
0.09	4.9	0.70	Os11g0439600	AK069955.1	-	Nod factor binding lectin-nucleotidephosphohydrolase	2e-1	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.3 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
52.9	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.6	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.3	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.4	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006527 The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
0.222 1 GO:0006879 Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
0.182 1 GO:0008295 The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.

SF	Genes	GO ID	Process Name
0.250	1	GO:0006527	The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
0.222	1	GO:0006879	Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
0.182	1	GO:0008295	The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g19400, orthologous to the query gene, Os04g0107700

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g19400 821474 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. H.G. S.X.
0.43 55.3 At1g10350 837574 DNAJ heat shock protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV O.I. H.G. S.X.
0.34 39.8 At3g62370 825410 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.32 35.7 At3g07690 819960 NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor F:in 8 functions;P:glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process;C:glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMPFA O.I. H.G. S.X.
0.30 32.1 At4g17270 827441 Mo25 family protein F:binding;P:biological_process unknown;C:plasma membrane;MFPO O.I. H.G. S.X.
0.29 30.3 At1g01800 839259 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:plant-type cell wall;BOMFPA O.I. H.G. S.X.
0.29 30.3 At3g13360 820536 WIP3 (WPP-domain Interacting Protein 3) F:molecular_function unknown;P:biological_process unknown;C:nuclear envelope;OPMFB O.I. H.G. S.X.
0.28 30.3 At5g46630 834706 clathrin adaptor complexes medium subunit family protein clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes O.I. H.G. S.X.
0.28 30.3 At5g56610 835762 dual specificity protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV O.I. H.G. S.X.
0.27 26.2 At3g61540 825327 peptidase family protein F:peptidase activity, aminopeptidase activity;P:proteolysis;C:vacuole;BOFPM O.I. H.G. S.X.
0.26 24.4 At4g05160 825864 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. O.I. H.G. S.X.
0.25 22.6 At3g08550 820002 KOB1 (KOBITO) mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane Protein O.I. H.G. S.X.
0.25 22.6 At4g23650 828465 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. O.I. H.G. S.X.
0.24 20.7 At5g60620 836183 phospholipid/glycerol acyltransferase family protein F:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPF O.I. H.G. S.X.
0.24 20.7 At3g15610 820803 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. H.G. S.X.
0.23 19.3 At2g13560 815842 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA O.I. H.G. S.X.
0.23 19.3 At3g12290 820409 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA O.I. H.G. S.X.
0.23 19.3 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP O.I. H.G. S.X.
0.23 19.3 At2g25280 817066 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP O.I. H.G. S.X.
0.22 17.5 At4g14880 827145 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. O.I. H.G. S.X.
0.20 14.4 At4g39990 830160 RABA4B (RAB GTPASE HOMOLOG A4B) GTP-binding protein ATGB3 O.I. H.G. S.X.
0.20 14.4 At3g05010 819662 transmembrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;MPBO O.I. H.G. S.X.
0.18 11.4 At1g04750 839419 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) vesicle-associated membrane protein 7B (At VAMP7B) mRNA, O.I. H.G. S.X.
0.18 11.4 At2g47320 819345 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;BOMFPA O.I. H.G. S.X.
0.18 11.4 At4g24390 828541 F-box family protein (FBX14) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMOF O.I. H.G. S.X.
0.18 11.4 At5g55500 835643 XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE) Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. O.I. H.G. S.X.
0.17 10.2 At4g35260 829679 IDH1 (ISOCITRATE DEHYDROGENASE 1) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) O.I. H.G. S.X.
0.17 10.2 At2g30710 817622 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP O.I. H.G. S.X.
0.17 10.2 At5g50000 835064 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.16 8.8 At1g05500 837052 NTMC2T2.1 F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. H.G. S.X.
0.16 8.8 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB O.I. H.G. S.X.
0.16 8.8 At2g30980 817649 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. O.I. H.G. S.X.
0.15 7.8 At2g36360 818209 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA O.I. H.G. S.X.
0.15 7.8 At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA O.I. H.G. S.X.
0.15 7.8 At5g49950 835059 embryogenesis-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP O.I. H.G. S.X.
0.15 7.8 At5g08290 830725 YLS8 Encodes Dim1 homolog. O.I. H.G. S.X.
0.15 7.8 At3g09740 820132 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) O.I. H.G. S.X.
0.14 6.8 At1g26640 839204 aspartate/glutamate/uridylate kinase family protein F:molecular_function unknown;P:amino acid biosynthetic process;C:cellular_component unknown;BAOPM O.I. H.G. S.X.
0.14 6.8 At5g09850 830845 transcription elongation factor-related F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV O.I. H.G. S.X.
0.14 6.8 At5g05700 830454 ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence. O.I. H.G. S.X.
0.14 6.8 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB O.I. H.G. S.X.
0.13 5.8 At1g35160 840403 GF14 PHI (GF14 PROTEIN PHI CHAIN) GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.12 4.9 At5g10560 830921 glycosyl hydrolase family 3 protein F:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAM O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At3g19400	821474	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	H.G.	S.X.
0.43	55.3	At1g10350	837574	DNAJ heat shock protein, putative	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV	O.I.	H.G.	S.X.
0.34	39.8	At3g62370	825410	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.32	35.7	At3g07690	819960	NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor	F:in 8 functions;P:glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process;C:glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMPFA	O.I.	H.G.	S.X.
0.30	32.1	At4g17270	827441	Mo25 family protein	F:binding;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	H.G.	S.X.
0.29	30.3	At1g01800	839259	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:plant-type cell wall;BOMFPA	O.I.	H.G.	S.X.
0.29	30.3	At3g13360	820536	WIP3 (WPP-domain Interacting Protein 3)	F:molecular_function unknown;P:biological_process unknown;C:nuclear envelope;OPMFB	O.I.	H.G.	S.X.
0.28	30.3	At5g46630	834706	clathrin adaptor complexes medium subunit family protein	clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes	O.I.	H.G.	S.X.
0.28	30.3	At5g56610	835762	dual specificity protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV	O.I.	H.G.	S.X.
0.27	26.2	At3g61540	825327	peptidase family protein	F:peptidase activity, aminopeptidase activity;P:proteolysis;C:vacuole;BOFPM	O.I.	H.G.	S.X.
0.26	24.4	At4g05160	825864	4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative	Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.	O.I.	H.G.	S.X.
0.25	22.6	At3g08550	820002	KOB1 (KOBITO)	mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane Protein	O.I.	H.G.	S.X.
0.25	22.6	At4g23650	828465	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.	O.I.	H.G.	S.X.
0.24	20.7	At5g60620	836183	phospholipid/glycerol acyltransferase family protein	F:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPF	O.I.	H.G.	S.X.
0.24	20.7	At3g15610	820803	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	H.G.	S.X.
0.23	19.3	At2g13560	815842	malate oxidoreductase, putative	F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA	O.I.	H.G.	S.X.
0.23	19.3	At3g12290	820409	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA	O.I.	H.G.	S.X.
0.23	19.3	At3g59950	825165	autophagy 4b (APG4b)	F:peptidase activity;P:autophagy;C:chloroplast;MOFP	O.I.	H.G.	S.X.
0.23	19.3	At2g25280	817066	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP	O.I.	H.G.	S.X.
0.22	17.5	At4g14880	827145	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.	O.I.	H.G.	S.X.
0.20	14.4	At4g39990	830160	RABA4B (RAB GTPASE HOMOLOG A4B)	GTP-binding protein ATGB3	O.I.	H.G.	S.X.
0.20	14.4	At3g05010	819662	transmembrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;MPBO	O.I.	H.G.	S.X.
0.18	11.4	At1g04750	839419	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	vesicle-associated membrane protein 7B (At VAMP7B) mRNA,	O.I.	H.G.	S.X.
0.18	11.4	At2g47320	819345	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;BOMFPA	O.I.	H.G.	S.X.
0.18	11.4	At4g24390	828541	F-box family protein (FBX14)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMOF	O.I.	H.G.	S.X.
0.18	11.4	At5g55500	835643	XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)	Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.	O.I.	H.G.	S.X.
0.17	10.2	At4g35260	829679	IDH1 (ISOCITRATE DEHYDROGENASE 1)	NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)	O.I.	H.G.	S.X.
0.17	10.2	At2g30710	817622	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP	O.I.	H.G.	S.X.
0.17	10.2	At5g50000	835064	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.16	8.8	At1g05500	837052	NTMC2T2.1	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	H.G.	S.X.
0.16	8.8	At4g18060	827531	clathrin binding	F:clathrin binding;P:unknown;C:unknown;MOFPB	O.I.	H.G.	S.X.
0.16	8.8	At2g30980	817649	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.	O.I.	H.G.	S.X.
0.15	7.8	At2g36360	818209	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA	O.I.	H.G.	S.X.
0.15	7.8	At5g49760	835039	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA	O.I.	H.G.	S.X.
0.15	7.8	At5g49950	835059	embryogenesis-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP	O.I.	H.G.	S.X.
0.15	7.8	At5g08290	830725	YLS8	Encodes Dim1 homolog.	O.I.	H.G.	S.X.
0.15	7.8	At3g09740	820132	SYP71 (SYNTAXIN OF PLANTS 71)	syntaxin of plants 71 (SYP71)	O.I.	H.G.	S.X.
0.14	6.8	At1g26640	839204	aspartate/glutamate/uridylate kinase family protein	F:molecular_function unknown;P:amino acid biosynthetic process;C:cellular_component unknown;BAOPM	O.I.	H.G.	S.X.
0.14	6.8	At5g09850	830845	transcription elongation factor-related	F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV	O.I.	H.G.	S.X.
0.14	6.8	At5g05700	830454	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.	O.I.	H.G.	S.X.
0.14	6.8	At1g68070	843135	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB	O.I.	H.G.	S.X.
0.13	5.8	At1g35160	840403	GF14 PHI (GF14 PROTEIN PHI CHAIN)	GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.
0.12	4.9	At5g10560	830921	glycosyl hydrolase family 3 protein	F:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAM	O.I.	H.G.	S.X.

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Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
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Zea_mays

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Gene ID	Os04g0107700
Gene name
Homology with Arabidopsis	Similar to At3g19400: cysteine proteinase, putative (HF=3e-3)
Module size	6 genes
NF	0.29
%ile	30.0

Co-expression analysis

Gene ID Os04g0107700 Gene name Homology with ArabidopsisSimilar to At3g19400: cysteine proteinase, putative (HF=3e-3) Module size 6 genes NF 0.29 %ile 30.0

Co-expressed genes

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Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0107700

Gene name
Homology with Arabidopsis Similar to At3g19400: cysteine proteinase, putative (HF=3e-3)

Module size 6 genes

NF 0.29

%ile 30.0

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays