Co-expression analysis

Gene ID Os04g0107600
Gene name
Homology with ArabidopsisSimilar to At5g08139: zinc finger (C3HC4-type RING finger) family protein (HF=1e+0)
Module size 8 genes
NF 0.44
%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.78Os04g0107600AK058573.1-Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)1e+0At5g08139zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5371.30.81Os11g0689100AK108692.1-Disease resistance protein family protein2e+0At4g22400unknown proteinO.I.H.G.S.X.
0.5068.00.81Os01g0327000NM_183815.1-Conserved hypothetical protein7e-7At1g14540anionic peroxidase, putativeO.I.H.G.S.X.
0.4762.30.83Os03g0121300AK064633.1-Peroxidase 19e-3At5g14130peroxidase, putativeO.I.H.G.S.X.
0.4458.10.81Os04g0494600AK110895.1-Protein of unknown function DUF642 family protein5e-2At3g17410serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.4051.10.82Os04g0308400CB965389-Conserved hypothetical protein1e+1At3g48020-O.I.H.G.S.X.
0.3440.00.81Os10g0459700AK110328.1-Xyloglucan galactosyltransferase7e-2At4g13990exostosin family proteinO.I.H.G.S.X.
0.3134.50.81Os07g0524900AK071512.1-Protein of unknown function DUF6 domain containingprotein3e+0At4g16240unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.599.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
35.199.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.297.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
7.097.4GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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