CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0854600

Gene name
Homology with Arabidopsis Similar to At3g50820: PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) (HF=7e-1)

Module size 8 genes

NF 0.35

%ile 39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.87 Os03g0854600 AK104577.1 - Glycoside hydrolase, family 16 domain containingprotein 7e-1 At3g50820 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) O.I. H.G. S.X.
0.57 77.0 0.87 Os07g0557200 AK101098.1 - Delayed-early response protein/equilibrativenucleoside transporter family protein 8e-5 At4g05120 FUR1 (FUDR RESISTANT 1) O.I. H.G. S.X.
0.33 38.8 0.87 Os03g0719000 AK108923.1 - MAP65/ASE1 family protein 5e-2 At1g52890 ANAC019 (Arabidopsis NAC domain containing protein 19) O.I. H.G. S.X.
0.31 34.5 0.86 Os01g0826800 AK111090.1 - Conserved hypothetical protein 1e-1 At2g30230 unknown protein O.I. H.G. S.X.
0.27 27.5 0.87 Os06g0534800 AK120650.1 - Ankyrin repeat containing protein 3e+0 At5g23100 unknown protein O.I. H.G. S.X.
0.27 27.5 0.90 Os08g0532700 AK073978.1 - Peroxidase 55 precursor (EC 1.11.1.7) (AtperoxP55) (ATP20a) 4e-5 At5g58400 peroxidase, putative O.I. H.G. S.X.
0.20 16.5 0.90 Os01g0719600 AK070988.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-6 At3g24450 copper-binding family protein O.I. H.G. S.X.
0.19 15.1 0.88 Os08g0501900 AK063130.1 - Conserved hypothetical protein 1e+0 At5g23750 remorin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.5 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.4 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.027 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
0.021 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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