Co-expression analysis

Gene ID Os03g0849700
Gene name
Homology with ArabidopsisSimilar to At4g02750: pentatricopeptide (PPR) repeat-containing protein (HF=1e-1)
Module size 6 genes
NF 0.60
%ile 81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.97Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.6079.70.97Os07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.5068.00.97Os03g0192800AK110648.1-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein1e-5At3g49600UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26)O.I.H.G.S.X.
0.5068.00.98Os04g0218600AK103472.1-Galactose-binding like domain containing protein4e-1At1g44085glycine-rich proteinO.I.H.G.S.X.
0.4458.10.97Os02g0772300AK071492.1-GCN5-related N-acetyltransferase domain containingprotein3e+0At5g49540unknown proteinO.I.H.G.S.X.
0.4355.40.97Os04g0528400AK101159.1-Hus1-like protein family protein2e-8At1g17840WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.898.4GSM154959Leaf_OsRR6-overexpressor_replicate 1GSE6720Gene expression in OsRR6-overexpression lineLink to GEO
12.098.3GSM173093Rice OsSRT1 RNAi transgenic line LM2GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
10.598.1GSM173094Rice OsSRT1 RNAi transgenic line LM3GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
8.097.6GSM254091Rice overexpressed OsSKIPa, biological repeat 1GSE10054Expression information of splicing factor OsSKIPa knock-down and overexpressed riceLink to GEO
7.597.5GSM207559Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
5.997.0GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
4.996.5GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
4.996.5GSM207560Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
4.095.9GSM159172Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
3.695.5GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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