CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0832800

Gene name
Homology with Arabidopsis Similar to At4g00400: GPAT8 (glycerol-3-phosphate acyltransferase 8) (HF=4e-2)

Module size 6 genes

NF 0.73

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.83 95.8 0.91 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.71 89.6 0.89 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.67 87.2 0.90 Os01g0872600 AK060248.1 - Hypothetical protein 6e-2 At1g72125 transporter O.I. H.G. S.X.
0.56 76.3 0.91 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.46 60.9 0.91 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9102.1.A1_at, orthologous to the query gene, Os03g0832800

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.9 Zm.9102.1.A1_at At4g00400 - - 2e-2 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) O.I. H.G. S.X.
0.77 92.1 Zm.3925.1.A1_at At4g00400 hypothetical protein LOC100273553 - 4e-8 At1g31930 XLG3 (extra-large GTP-binding protein 3) O.I. H.G. S.X.
0.56 74.4 Zm.10534.1.A1_x_at At4g00400 receptor protein kinase CLAVATA1 - 2e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) O.I. H.G. S.X.
0.55 71.6 Zm.8314.1.A1_at At4g00400 hypothetical protein LOC100277461 - 6e+0 At2g38640 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.6645.1.S1_at At4g00400 NADH ubiquinone oxidoreductase B22-like subunit - 2e+0 At2g40810 AtATG18c O.I. H.G. S.X.
0.29 28.1 Zm.19350.1.A1_at At4g00400 yip1 domain family member 6 - 2e-18 At4g30260 integral membrane Yip1 family protein O.I. H.G. S.X.
0.23 18.6 Zm.2810.1.S1_at At4g00400 calcitonin peptide-receptor component protein - 7e-1 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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