CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0831200

Gene name
Homology with Arabidopsis Similar to At5g28630: glycine-rich protein (HF=1e-1)

Module size 12 genes

NF 0.51

%ile 67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.95 Os03g0831200 AK073709.1 - Zn-finger, GATA type domain containing protein 1e-1 At5g28630 glycine-rich protein O.I. H.G. S.X.
0.59 78.0 0.96 Os07g0688800 AK068462.1 - Aldehyde dehydrogenase domain containing protein 4e-22 At3g66658 ALDH22a1 (Aldehyde Dehydrogenase 22a1) O.I. H.G. S.X.
0.58 77.0 0.97 Os03g0347200 AY017415.1 - Initiation factor eIF-4 gamma, middle domaincontaining protein 3e-8 At2g13540 ABH1 (ABA HYPERSENSITIVE 1) O.I. H.G. S.X.
0.57 77.0 0.96 Os12g0541400 BQ907958 - Hypothetical protein 3e+0 At5g01300 phosphatidylethanolamine-binding family protein O.I. H.G. S.X.
0.56 76.3 0.97 Os02g0179300 AK069065.1 - RAD23 protein, isoform II 9e-10 At1g16190 DNA repair protein RAD23, putative O.I. H.G. S.X.
0.54 71.9 0.97 Os01g0710000 AK111794.1 - - 8e-63 At2g19520 FVE O.I. H.G. S.X.
0.50 68.0 0.97 Os03g0288600 AK101532.1 - Muscle derived-like protein 6e-11 At5g50840 - O.I. H.G. S.X.
0.48 63.7 0.97 Os05g0314100 AK121220.1 - Small nuclear ribonucleoprotein (Sm protein)family protein 6e-46 At2g47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative O.I. H.G. S.X.
0.44 58.1 0.97 Os11g0568500 AK059656.1 - Prefoldin beta-like family protein 7e-3 At3g22480 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.41 52.4 0.96 Os06g0149400 AK071177.1 - Nucleosome assembly protein 1 1e-36 At5g56950 NAP1 O.I. H.G. S.X.
0.40 51.1 0.96 Os02g0126700 AK063621.1 - Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE) 2e-11 At2g18740 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative O.I. H.G. S.X.
0.37 45.0 0.96 Os09g0569400 AK063384.1 - RNA-metabolising metallo-beta-lactamase domaincontaining protein 7e-21 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.7 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 2 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.138 2 GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
0.087 1 GO:0006289 A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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