CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0824400

Gene name
Homology with Arabidopsis Similar to At1g20575: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (HF=3e-18)

Module size 25 genes

NF 0.24

%ile 23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 0.95 Os03g0824400 AK070153.1 - Glycosyl transferase, family 2 domain containingprotein 3e-18 At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative O.I. H.G. S.X.
0.41 52.4 0.96 Os05g0446300 AK066998.1 - G10 protein homolog 2e-12 At4g21110 G10 family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os01g0621700 AK108938.1 - Myosin tail 2 domain containing protein 4e-1 At3g45220 serpin, putative / serine protease inhibitor, putative O.I. H.G. S.X.
0.34 40.0 0.96 Os01g0172000 AK068405.1 - Hypothetical protein 6e-5 At2g47760 ALG3 O.I. H.G. S.X.
0.34 40.0 0.96 Os07g0211800 AK065682.1 - Conserved hypothetical protein 5e-3 At5g19050 unknown protein O.I. H.G. S.X.
0.33 38.8 0.96 Os02g0119300 AK065427.1 - Peptidase M14, carboxypeptidase A family protein 3e-25 At5g42320 metallocarboxypeptidase/ zinc ion binding O.I. H.G. S.X.
0.32 36.3 0.95 Os02g0128600 AK103009.1 - ADP-ribosylation factor 4e-14 At3g03120 ATARFB1C (ADP-ribosylation factor B1C) O.I. H.G. S.X.
0.31 34.5 0.96 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.
0.29 31.1 0.96 Os06g0218100 AK058667.1 - Hypothetical protein 2e-3 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.29 31.1 0.96 Os03g0376900 AK101213.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 5e-30 At3g01150 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) O.I. H.G. S.X.
0.28 31.1 0.96 Os04g0401300 AK121122.1 - CBS domain containing protein 1e-2 At2g23320 WRKY15 O.I. H.G. S.X.
0.28 31.1 0.96 Os01g0813500 AK073388.1 - Vacuolar protein sorting 36 family protein 4e-3 At5g04920 vacuolar protein sorting 36 family protein / VPS36 family protein O.I. H.G. S.X.
0.27 27.5 0.96 Os09g0314300 AK071933.1 - Peroxin-3 family protein 2e-1 At1g48635 peroxin-3 family protein O.I. H.G. S.X.
0.26 25.6 0.95 Os02g0265400 AK060027.1 - Vacuolar protein sorting 29 (Vesicle proteinsorting 29) (hVPS29) (MDS007) (PEP11) (DC7/DC15). Spliceisoform 2 2e-25 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.23 21.2 0.97 Os03g0209400 AK059829.1 - Got1-like protein family protein 9e-6 At5g01430 Got1-like family protein O.I. H.G. S.X.
0.23 21.2 0.96 Os03g0856200 AK070146.1 - Ku domain containing protein 1e-1 At1g48050 KU80 O.I. H.G. S.X.
0.21 17.9 0.96 Os03g0831900 AK059869.1 - Zn-finger, C2H2 type domain containing protein 5e-23 At3g05760 nucleic acid binding / zinc ion binding O.I. H.G. S.X.
0.21 17.9 0.97 Os04g0629000 AK120653.1 - Conserved hypothetical protein 3e-1 At3g21865 PEX22 (peroxin 22) O.I. H.G. S.X.
0.20 16.5 0.96 Os03g0137500 AK107864.1 - VDAC3.1 3e+0 At5g53700 - O.I. H.G. S.X.
0.19 15.1 0.96 Os09g0515800 AK066076.1 - RabGAP/TBC domain containing protein 3e-19 At2g30710 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.96 Os08g0427300 AK066491.1 - Conserved hypothetical protein 3e-7 At1g16020 unknown protein O.I. H.G. S.X.
0.16 11.3 0.97 Os03g0791500 9631.m05671 - Synaptobrevin family protein 6e-26 At1g11890 SEC22 O.I. H.G. S.X.
0.15 10.3 0.96 Os08g0427900 AK109208.1 - Hin19 (Fragment) 5e-5 At5g37720 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.13 8.2 0.96 Os03g0784400 AK103474.1 - Conserved hypothetical protein 3e-19 At3g22290 unknown protein O.I. H.G. S.X.
0.11 6.5 0.96 Os01g0253100 AK067133.1 - Pto kinase interactor 1 6e-12 At4g02010 protein kinase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.72	89.8	0.95	Os03g0824400	AK070153.1	-	Glycosyl transferase, family 2 domain containingprotein	3e-18	At1g20575	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	O.I.	H.G.	S.X.
0.41	52.4	0.96	Os05g0446300	AK066998.1	-	G10 protein homolog	2e-12	At4g21110	G10 family protein	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os01g0621700	AK108938.1	-	Myosin tail 2 domain containing protein	4e-1	At3g45220	serpin, putative / serine protease inhibitor, putative	O.I.	H.G.	S.X.
0.34	40.0	0.96	Os01g0172000	AK068405.1	-	Hypothetical protein	6e-5	At2g47760	ALG3	O.I.	H.G.	S.X.
0.34	40.0	0.96	Os07g0211800	AK065682.1	-	Conserved hypothetical protein	5e-3	At5g19050	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os02g0119300	AK065427.1	-	Peptidase M14, carboxypeptidase A family protein	3e-25	At5g42320	metallocarboxypeptidase/ zinc ion binding	O.I.	H.G.	S.X.
0.32	36.3	0.95	Os02g0128600	AK103009.1	-	ADP-ribosylation factor	4e-14	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os04g0600800	9632.m04940	-	Conserved hypothetical protein	1e-25	At4g27630	GTG2 (GPCR-TYPE G PROTEIN 2)	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os06g0218100	AK058667.1	-	Hypothetical protein	2e-3	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os03g0376900	AK101213.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	5e-30	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os04g0401300	AK121122.1	-	CBS domain containing protein	1e-2	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os01g0813500	AK073388.1	-	Vacuolar protein sorting 36 family protein	4e-3	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os09g0314300	AK071933.1	-	Peroxin-3 family protein	2e-1	At1g48635	peroxin-3 family protein	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os02g0265400	AK060027.1	-	Vacuolar protein sorting 29 (Vesicle proteinsorting 29) (hVPS29) (MDS007) (PEP11) (DC7/DC15). Spliceisoform 2	2e-25	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os03g0209400	AK059829.1	-	Got1-like protein family protein	9e-6	At5g01430	Got1-like family protein	O.I.	H.G.	S.X.
0.23	21.2	0.96	Os03g0856200	AK070146.1	-	Ku domain containing protein	1e-1	At1g48050	KU80	O.I.	H.G.	S.X.
0.21	17.9	0.96	Os03g0831900	AK059869.1	-	Zn-finger, C2H2 type domain containing protein	5e-23	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.
0.21	17.9	0.97	Os04g0629000	AK120653.1	-	Conserved hypothetical protein	3e-1	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.
0.20	16.5	0.96	Os03g0137500	AK107864.1	-	VDAC3.1	3e+0	At5g53700	-	O.I.	H.G.	S.X.
0.19	15.1	0.96	Os09g0515800	AK066076.1	-	RabGAP/TBC domain containing protein	3e-19	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.
0.17	12.6	0.96	Os08g0427300	AK066491.1	-	Conserved hypothetical protein	3e-7	At1g16020	unknown protein	O.I.	H.G.	S.X.
0.16	11.3	0.97	Os03g0791500	9631.m05671	-	Synaptobrevin family protein	6e-26	At1g11890	SEC22	O.I.	H.G.	S.X.
0.15	10.3	0.96	Os08g0427900	AK109208.1	-	Hin19 (Fragment)	5e-5	At5g37720	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.13	8.2	0.96	Os03g0784400	AK103474.1	-	Conserved hypothetical protein	3e-19	At3g22290	unknown protein	O.I.	H.G.	S.X.
0.11	6.5	0.96	Os01g0253100	AK067133.1	-	Pto kinase interactor 1	6e-12	At4g02010	protein kinase family protein	O.I.	H.G.	S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.8 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.0 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
30.8	99.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
27.0	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.7	98.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.7	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0007031 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
0.027 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.017 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

SF	Genes	GO ID	Process Name
0.077	1	GO:0007031	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
0.027	1	GO:0007264	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.017	1	GO:0006886	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os03g0824400
Gene name
Homology with Arabidopsis	Similar to At1g20575: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (HF=3e-18)
Module size	25 genes
NF	0.24
%ile	23.1

Co-expression analysis

Gene ID Os03g0824400 Gene name Homology with ArabidopsisSimilar to At1g20575: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (HF=3e-18) Module size 25 genes NF 0.24 %ile 23.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0824400

Gene name
Homology with Arabidopsis Similar to At1g20575: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (HF=3e-18)

Module size 25 genes

NF 0.24

%ile 23.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays