CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0823100

Gene name
Homology with Arabidopsis Similar to At5g59250: sugar transporter family protein (HF=8e-26)

Module size 7 genes

NF 0.36

%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.94 Os03g0823100 AK103844.1 - Sugar transporter-like protein 8e-26 At5g59250 sugar transporter family protein O.I. H.G. S.X.
0.42 53.9 0.94 Os02g0515000 AK066257.1 - Conserved hypothetical protein 1e+0 At1g50340 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.40 51.1 0.93 Os04g0488600 AK060198.1 - Protein of unknown function DUF565 family protein 1e-11 At5g43050 unknown protein O.I. H.G. S.X.
0.30 32.7 0.94 Os01g0259600 AK066193.1 - Molybdenum cofactor biosynthesis protein domaincontaining protein 4e-25 At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0768600 AK059725.1 - - 2e-68 At5g09650 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) O.I. H.G. S.X.
0.27 27.5 0.94 Os12g0206700 AK071313.1 - Hypothetical protein 4e-1 At3g11110 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.27 27.5 0.95 Os03g0425200 AK101293.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 5e-14 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.94	Os03g0823100	AK103844.1	-	Sugar transporter-like protein	8e-26	At5g59250	sugar transporter family protein	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os02g0515000	AK066257.1	-	Conserved hypothetical protein	1e+0	At1g50340	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.40	51.1	0.93	Os04g0488600	AK060198.1	-	Protein of unknown function DUF565 family protein	1e-11	At5g43050	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.94	Os01g0259600	AK066193.1	-	Molybdenum cofactor biosynthesis protein domaincontaining protein	4e-25	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.
0.27	27.5	0.94	Os02g0768600	AK059725.1	-	-	2e-68	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	O.I.	H.G.	S.X.
0.27	27.5	0.94	Os12g0206700	AK071313.1	-	Hypothetical protein	4e-1	At3g11110	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os03g0425200	AK101293.1	-	Inosine/uridine-preferring nucleoside hydrolasedomain containing protein	5e-14	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.6 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.6 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
30.6	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.6	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.4	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0	97.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g59250, orthologous to the query gene, Os03g0823100

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g59250 836043 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane, chloroplast envelope;BFMOPAV O.I. H.G. S.X.
0.70 83.5 At1g67700 843095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PO O.I. H.G. S.X.
0.68 82.2 At2g44920 819101 thylakoid lumenal 15 kDa protein, chloroplast F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV O.I. H.G. S.X.
0.67 81.6 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. O.I. H.G. S.X.
0.67 81.6 At1g50320 841454 ATHX encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.66 80.1 At2g01110 814640 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. O.I. H.G. S.X.
0.66 80.1 At5g66190 836751 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane. O.I. H.G. S.X.
0.65 79.6 At4g31530 829280 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOPMFA O.I. H.G. S.X.
0.64 78.9 At4g38225 829979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.64 78.9 At5g51110 835185 4-alpha-hydroxytetrahydrobiopterin dehydratase F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF O.I. H.G. S.X.
0.64 78.9 At4g28030 828918 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA O.I. H.G. S.X.
0.63 78.1 At3g51510 824314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.63 78.1 At5g16710 831532 DHAR3 (dehydroascorbate reductase 1) The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. H.G. S.X.
0.61 76.7 At5g61410 836262 RPE Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA O.I. H.G. S.X.
0.61 76.7 At5g03880 831679 electron carrier F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM O.I. H.G. S.X.
0.61 76.7 At5g23120 832376 HCF136 encodes a stability and/or assembly factor of photosystem II O.I. H.G. S.X.
0.61 76.7 At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.60 75.7 At5g53490 835431 thylakoid lumenal 17.4 kDa protein, chloroplast thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein. O.I. H.G. S.X.
0.60 75.7 At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO O.I. H.G. S.X.
0.60 75.7 At3g11950 820368 prenyltransferase/ zinc ion binding publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model. O.I. H.G. S.X.
0.60 75.7 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF O.I. H.G. S.X.
0.60 75.7 At3g12780 820461 PGK1 (PHOSPHOGLYCERATE KINASE 1) nuclear phosphoglycerate kinase (PGK1) O.I. H.G. S.X.
0.59 74.7 At3g10060 820167 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. H.G. S.X.
0.59 74.7 At3g26900 822306 shikimate kinase family protein F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF O.I. H.G. S.X.
0.58 73.8 At2g34860 818051 EDA3 (embryo sac development arrest 3) F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF O.I. H.G. S.X.
0.57 73.8 At3g15360 820775 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.57 73.8 At2g28800 817429 ALB3 (ALBINO 3) member of Chloroplast membrane protein ALBINO3 family O.I. H.G. S.X.
0.57 73.8 At3g23700 821951 S1 RNA-binding domain-containing protein F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA O.I. H.G. S.X.
0.57 73.8 At3g61870 825360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOP O.I. H.G. S.X.
0.57 73.8 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO O.I. H.G. S.X.
0.57 73.8 At1g54500 841892 rubredoxin family protein F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP O.I. H.G. S.X.
0.57 73.8 At2g46820 819295 PSI-P (PHOTOSYSTEM I P SUBUNIT) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. O.I. H.G. S.X.
0.57 73.8 At1g65260 842833 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) F:unknown;P:biological_process unknown;C:in 8 components;BOMVFPA O.I. H.G. S.X.
0.57 73.8 At4g32260 829359 ATP synthase family F:hydrogen ion transmembrane transporter activity;P:defense response to bacterium;C:thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;BOPMAFV O.I. H.G. S.X.
0.56 73.0 At3g16140 820859 PSAH-1 (photosystem I subunit H-1) Encodes subunit H of photosystem I reaction center subunit VI. O.I. H.G. S.X.
0.56 73.0 At4g01050 827921 hydroxyproline-rich glycoprotein family protein hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. O.I. H.G. S.X.
0.56 73.0 At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator O.I. H.G. S.X.
0.55 70.6 At4g04640 825797 ATPC1 One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase. O.I. H.G. S.X.
0.55 70.6 At4g25080 828611 CHLM (magnesium-protoporphyrin IX methyltransferase) Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope. O.I. H.G. S.X.
0.55 70.6 At3g50820 824246 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII. O.I. H.G. S.X.
0.55 70.6 At4g01150 828181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO O.I. H.G. S.X.
0.55 70.6 At5g38660 833856 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) mutant has Altered acclimation responses; O.I. H.G. S.X.
0.54 69.5 At1g54780 841919 thylakoid lumen 18.3 kDa protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOM O.I. H.G. S.X.
0.54 69.5 At4g03280 827996 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen. O.I. H.G. S.X.
0.53 68.6 At4g34190 829567 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. O.I. H.G. S.X.
0.53 68.6 At4g05180 825866 PSBQ-2 Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. O.I. H.G. S.X.
0.53 68.6 At1g45474 841099 LHCA5 Encodes a component of the light harvesting complex of photosystem I. O.I. H.G. S.X.
0.53 68.6 At5g01530 830325 chlorophyll A-B binding protein CP29 (LHCB4) F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POM O.I. H.G. S.X.
0.52 67.4 At1g74730 843812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.52 67.4 At4g21280 827877 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. O.I. H.G. S.X.
0.52 67.4 At4g20360 827784 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAV O.I. H.G. S.X.
0.52 67.4 At3g08010 819992 ATAB2 Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. O.I. H.G. S.X.
0.52 67.4 At2g20890 816623 PSB29 Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. O.I. H.G. S.X.
0.52 67.4 At2g27680 817314 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM O.I. H.G. S.X.
0.52 67.4 At3g56940 824861 CRD1 (COPPER RESPONSE DEFECT 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. O.I. H.G. S.X.
0.51 66.3 At1g12900 837848 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity;P:glycolysis, glucose metabolic process, metabolic process;C:apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPFMA O.I. H.G. S.X.
0.50 65.3 At1g67740 843099 PSBY PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood. O.I. H.G. S.X.
0.50 65.3 At2g48070 819419 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae. O.I. H.G. S.X.
0.50 65.3 At3g55250 824691 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P O.I. H.G. S.X.
0.50 65.3 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.49 63.5 At3g56650 824832 thylakoid lumenal 20 kDa protein F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO O.I. H.G. S.X.
0.49 63.5 At1g42970 840895 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. O.I. H.G. S.X.
0.48 62.5 At5g58330 835945 malate dehydrogenase (NADP), chloroplast, putative F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA O.I. H.G. S.X.
0.45 58.3 At5g52970 835375 thylakoid lumen 15.0 kDa protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;OBP O.I. H.G. S.X.
0.45 58.3 At3g01480 821137 CYP38 (cyclophilin 38) Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes. O.I. H.G. S.X.
0.45 58.3 At3g11630 820335 2-cys peroxiredoxin, chloroplast (BAS1) Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. O.I. H.G. S.X.
0.44 57.2 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP O.I. H.G. S.X.
0.44 57.2 At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein O.I. H.G. S.X.
0.44 57.2 At5g14260 831276 SET domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO O.I. H.G. S.X.
0.42 53.9 At5g30510 833138 RPS1 (RIBOSOMAL PROTEIN S1) F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA O.I. H.G. S.X.
0.41 52.4 At2g43030 818905 ribosomal protein L3 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP O.I. H.G. S.X.
0.39 48.4 At1g22700 838876 tetratricopeptide repeat (TPR)-containing protein Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. O.I. H.G. S.X.
0.39 48.4 At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM O.I. H.G. S.X.
0.36 43.6 At2g21170 816652 TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. O.I. H.G. S.X.
0.34 39.8 At1g02910 839350 LPA1 (LOW PSII ACCUMULATION1) Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At5g59250	836043	sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane, chloroplast envelope;BFMOPAV	O.I.	H.G.	S.X.
0.70	83.5	At1g67700	843095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PO	O.I.	H.G.	S.X.
0.68	82.2	At2g44920	819101	thylakoid lumenal 15 kDa protein, chloroplast	F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV	O.I.	H.G.	S.X.
0.67	81.6	At1g03680	839436	ATHM1	encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.	O.I.	H.G.	S.X.
0.67	81.6	At1g50320	841454	ATHX	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.66	80.1	At2g01110	814640	APG2 (ALBINO AND PALE GREEN 2)	mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.	O.I.	H.G.	S.X.
0.66	80.1	At5g66190	836751	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.	O.I.	H.G.	S.X.
0.65	79.6	At4g31530	829280	binding / catalytic	F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOPMFA	O.I.	H.G.	S.X.
0.64	78.9	At4g38225	829979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.64	78.9	At5g51110	835185	4-alpha-hydroxytetrahydrobiopterin dehydratase	F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF	O.I.	H.G.	S.X.
0.64	78.9	At4g28030	828918	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA	O.I.	H.G.	S.X.
0.63	78.1	At3g51510	824314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	H.G.	S.X.
0.63	78.1	At5g16710	831532	DHAR3 (dehydroascorbate reductase 1)	The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	H.G.	S.X.
0.61	76.7	At5g61410	836262	RPE	Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA	O.I.	H.G.	S.X.
0.61	76.7	At5g03880	831679	electron carrier	F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM	O.I.	H.G.	S.X.
0.61	76.7	At5g23120	832376	HCF136	encodes a stability and/or assembly factor of photosystem II	O.I.	H.G.	S.X.
0.61	76.7	At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.60	75.7	At5g53490	835431	thylakoid lumenal 17.4 kDa protein, chloroplast	thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.	O.I.	H.G.	S.X.
0.60	75.7	At2g21960	816732	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO	O.I.	H.G.	S.X.
0.60	75.7	At3g11950	820368	prenyltransferase/ zinc ion binding	publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.	O.I.	H.G.	S.X.
0.60	75.7	At1g20810	838672	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF	O.I.	H.G.	S.X.
0.60	75.7	At3g12780	820461	PGK1 (PHOSPHOGLYCERATE KINASE 1)	nuclear phosphoglycerate kinase (PGK1)	O.I.	H.G.	S.X.
0.59	74.7	At3g10060	820167	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	H.G.	S.X.
0.59	74.7	At3g26900	822306	shikimate kinase family protein	F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF	O.I.	H.G.	S.X.
0.58	73.8	At2g34860	818051	EDA3 (embryo sac development arrest 3)	F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF	O.I.	H.G.	S.X.
0.57	73.8	At3g15360	820775	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.57	73.8	At2g28800	817429	ALB3 (ALBINO 3)	member of Chloroplast membrane protein ALBINO3 family	O.I.	H.G.	S.X.
0.57	73.8	At3g23700	821951	S1 RNA-binding domain-containing protein	F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA	O.I.	H.G.	S.X.
0.57	73.8	At3g61870	825360	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOP	O.I.	H.G.	S.X.
0.57	73.8	At5g07020	830593	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO	O.I.	H.G.	S.X.
0.57	73.8	At1g54500	841892	rubredoxin family protein	F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP	O.I.	H.G.	S.X.
0.57	73.8	At2g46820	819295	PSI-P (PHOTOSYSTEM I P SUBUNIT)	Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.	O.I.	H.G.	S.X.
0.57	73.8	At1g65260	842833	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	F:unknown;P:biological_process unknown;C:in 8 components;BOMVFPA	O.I.	H.G.	S.X.
0.57	73.8	At4g32260	829359	ATP synthase family	F:hydrogen ion transmembrane transporter activity;P:defense response to bacterium;C:thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;BOPMAFV	O.I.	H.G.	S.X.
0.56	73.0	At3g16140	820859	PSAH-1 (photosystem I subunit H-1)	Encodes subunit H of photosystem I reaction center subunit VI.	O.I.	H.G.	S.X.
0.56	73.0	At4g01050	827921	hydroxyproline-rich glycoprotein family protein	hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain.	O.I.	H.G.	S.X.
0.56	73.0	At5g46110	834652	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator	O.I.	H.G.	S.X.
0.55	70.6	At4g04640	825797	ATPC1	One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.	O.I.	H.G.	S.X.
0.55	70.6	At4g25080	828611	CHLM (magnesium-protoporphyrin IX methyltransferase)	Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.	O.I.	H.G.	S.X.
0.55	70.6	At3g50820	824246	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.	O.I.	H.G.	S.X.
0.55	70.6	At4g01150	828181	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO	O.I.	H.G.	S.X.
0.55	70.6	At5g38660	833856	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	mutant has Altered acclimation responses;	O.I.	H.G.	S.X.
0.54	69.5	At1g54780	841919	thylakoid lumen 18.3 kDa protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOM	O.I.	H.G.	S.X.
0.54	69.5	At4g03280	827996	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen.	O.I.	H.G.	S.X.
0.53	68.6	At4g34190	829567	SEP1 (STRESS ENHANCED PROTEIN 1)	Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.	O.I.	H.G.	S.X.
0.53	68.6	At4g05180	825866	PSBQ-2	Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	O.I.	H.G.	S.X.
0.53	68.6	At1g45474	841099	LHCA5	Encodes a component of the light harvesting complex of photosystem I.	O.I.	H.G.	S.X.
0.53	68.6	At5g01530	830325	chlorophyll A-B binding protein CP29 (LHCB4)	F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POM	O.I.	H.G.	S.X.
0.52	67.4	At1g74730	843812	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	H.G.	S.X.
0.52	67.4	At4g21280	827877	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.	O.I.	H.G.	S.X.
0.52	67.4	At4g20360	827784	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAV	O.I.	H.G.	S.X.
0.52	67.4	At3g08010	819992	ATAB2	Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.	O.I.	H.G.	S.X.
0.52	67.4	At2g20890	816623	PSB29	Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.	O.I.	H.G.	S.X.
0.52	67.4	At2g27680	817314	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM	O.I.	H.G.	S.X.
0.52	67.4	At3g56940	824861	CRD1 (COPPER RESPONSE DEFECT 1)	Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.	O.I.	H.G.	S.X.
0.51	66.3	At1g12900	837848	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity;P:glycolysis, glucose metabolic process, metabolic process;C:apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPFMA	O.I.	H.G.	S.X.
0.50	65.3	At1g67740	843099	PSBY	PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.	O.I.	H.G.	S.X.
0.50	65.3	At2g48070	819419	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	O.I.	H.G.	S.X.
0.50	65.3	At3g55250	824691	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P	O.I.	H.G.	S.X.
0.50	65.3	At1g67280	843048	lactoylglutathione lyase, putative / glyoxalase I, putative	F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.49	63.5	At3g56650	824832	thylakoid lumenal 20 kDa protein	F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO	O.I.	H.G.	S.X.
0.49	63.5	At1g42970	840895	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase.	O.I.	H.G.	S.X.
0.48	62.5	At5g58330	835945	malate dehydrogenase (NADP), chloroplast, putative	F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA	O.I.	H.G.	S.X.
0.45	58.3	At5g52970	835375	thylakoid lumen 15.0 kDa protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;OBP	O.I.	H.G.	S.X.
0.45	58.3	At3g01480	821137	CYP38 (cyclophilin 38)	Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.	O.I.	H.G.	S.X.
0.45	58.3	At3g11630	820335	2-cys peroxiredoxin, chloroplast (BAS1)	Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.	O.I.	H.G.	S.X.
0.44	57.2	At3g54210	824588	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP	O.I.	H.G.	S.X.
0.44	57.2	At5g22830	832346	ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)	putative Mg(2+) transport protein	O.I.	H.G.	S.X.
0.44	57.2	At5g14260	831276	SET domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO	O.I.	H.G.	S.X.
0.42	53.9	At5g30510	833138	RPS1 (RIBOSOMAL PROTEIN S1)	F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA	O.I.	H.G.	S.X.
0.41	52.4	At2g43030	818905	ribosomal protein L3 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP	O.I.	H.G.	S.X.
0.39	48.4	At1g22700	838876	tetratricopeptide repeat (TPR)-containing protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	O.I.	H.G.	S.X.
0.39	48.4	At1g05190	839273	emb2394 (embryo defective 2394)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM	O.I.	H.G.	S.X.
0.36	43.6	At2g21170	816652	TIM (TRIOSEPHOSPHATE ISOMERASE)	Encodes triosephosphate isomerase.	O.I.	H.G.	S.X.
0.34	39.8	At1g02910	839350	LPA1 (LOW PSII ACCUMULATION1)	Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os03g0823100
Gene name
Homology with Arabidopsis	Similar to At5g59250: sugar transporter family protein (HF=8e-26)
Module size	7 genes
NF	0.36
%ile	40.8

Co-expression analysis

Gene ID Os03g0823100 Gene name Homology with ArabidopsisSimilar to At5g59250: sugar transporter family protein (HF=8e-26) Module size 7 genes NF 0.36 %ile 40.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0823100

Gene name
Homology with Arabidopsis Similar to At5g59250: sugar transporter family protein (HF=8e-26)

Module size 7 genes

NF 0.36

%ile 40.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays