CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0818200

Gene name
Homology with Arabidopsis Similar to At5g58490: cinnamoyl-CoA reductase family (HF=5e-14)

Module size 17 genes

NF 0.69

%ile 91.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.73 Os03g0818200 AK058641.1 - Conserved hypothetical protein 5e-14 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.85 96.1 0.80 Os09g0122500 CF327839 - Hypothetical protein 5e+0 At5g58787 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.84 96.0 0.73 Os05g0424700 AK107848.1 - Ctr copper transporter family protein 2e-12 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.83 95.8 0.80 Os06g0261300 AK073534.1 - Hypothetical protein 5e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) O.I. H.G. S.X.
0.79 93.6 0.73 Os06g0516300 9634.m03025 - - 1e+1 At5g53592 - O.I. H.G. S.X.
0.77 93.1 0.76 Os01g0691100 AK064045.1 - - 1e+0 At2g27390 proline-rich family protein O.I. H.G. S.X.
0.70 88.4 0.80 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.67 87.2 0.82 Os12g0571500 AK119942.1 - Hypothetical protein 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.65 83.8 0.84 Os01g0905400 AK063530.1 - Transcriptional factor B3 family protein 2e-2 At4g14580 CIPK4 (CBL-interacting protein kinase 4) O.I. H.G. S.X.
0.63 82.7 0.80 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.62 81.5 0.75 Os02g0467300 AK064583.1 - Conserved hypothetical protein 8e-2 At1g60640 unknown protein O.I. H.G. S.X.
0.61 81.2 0.85 Os01g0971600 AK070366.1 - Sn-glycerol-3-phosphate dehydrogenase (Fragment) 4e-12 At5g40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH O.I. H.G. S.X.
0.59 78.0 0.81 Os09g0326100 AK120843.1 - Protein kinase domain containing protein 6e-3 At5g65700 BAM1 (BARELY ANY MERISTEM 1) O.I. H.G. S.X.
0.59 78.0 0.80 Os08g0338500 AK107751.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-2 At5g40860 unknown protein O.I. H.G. S.X.
0.56 76.3 0.82 Os03g0730700 9631.m05092 - - 2e-1 At2g22980 serine-type carboxypeptidase O.I. H.G. S.X.
0.52 69.6 0.82 Os07g0170800 AK105849.1 - Conserved hypothetical protein 2e+0 At1g55675 unknown protein O.I. H.G. S.X.
0.40 51.1 0.83 Os06g0246500 AK105105.1 - Pyruvate dehydrogenase E1 alpha subunit (EC1.2.4.1) 2e-29 At1g59900 AT-E1 ALPHA O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0046168 The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
0.083 1 GO:0006825 The directed movement of copper (Cu) ions into, out of, within or between cells.
0.077 1 GO:0006072 The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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