Co-expression analysis

Gene ID Os03g0808600
Gene name
Homology with ArabidopsisSimilar to At3g57530: CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) (HF=4e-19)
Module size 18 genes
NF 0.48
%ile 62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.93Os03g0808600AK066615.1-Calcium-dependent protein kinase4e-19At3g57530CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)O.I.H.G.S.X.
0.6382.70.95Os11g0199700AK073816.1--2e-2At1g21380VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.6281.50.95Os09g0557800AK071848.1-Nonaspanin (TM9SF) family protein5e-46At5g25100endomembrane protein 70, putativeO.I.H.G.S.X.
0.5978.00.94Os02g0601100AK120475.1-Nucleotide-binding protein3e-46At5g50960NBP35 (NUCLEOTIDE BINDING PROTEIN 35)O.I.H.G.S.X.
0.5877.00.96Os06g0714200BM419528-Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein8e-19At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.5471.90.96Os04g0517400AK059571.1-Conserved hypothetical protein5e-15At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)O.I.H.G.S.X.
0.5269.60.95Os01g0780500AF225922.1-SCAMP family protein1e-14At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.5068.00.94Os02g0655700AK101068.1-Amino acid/polyamine transporter I family protein2e-17At1g05940CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)O.I.H.G.S.X.
0.4863.70.96Os07g0592200AK099740.1-Peptidase A1, pepsin family protein2e-11At5g43100aspartyl protease family proteinO.I.H.G.S.X.
0.4558.80.96Os09g0281700X59276.1-Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)1e-17At5g47960ATRABA4CO.I.H.G.S.X.
0.4458.10.96Os02g0581300AK071553.1-ASC1 (Alternaria stem canker resistance protein)5e-8At3g25540LAG1O.I.H.G.S.X.
0.4152.40.95Os02g0750600AK066145.1-Ubiquitin domain containing protein6e-7At1g22050MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)O.I.H.G.S.X.
0.4152.40.96Os06g0188000AK066305.1-Cyclic nucleotide-gated channel C (Fragment)1e-11At4g30360ATCNGC17O.I.H.G.S.X.
0.3541.70.96Os02g0822400AK062258.1-No apical meristem (NAM) protein domain containingprotein5e-3At5g09330anac082 (Arabidopsis NAC domain containing protein 82)O.I.H.G.S.X.
0.3440.00.95Os02g0730700AK072199.1-Peptidase A1, pepsin family protein4e-6At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.3440.00.95Os06g0103500AK060849.1-Acyl-CoA oxidase (EC 1.3.3.6)1e-50At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.3236.30.95Os04g0519900AK071665.1-Hypothetical protein3e-2At4g09960STK (SEEDSTICK)O.I.H.G.S.X.
0.2931.10.95Os03g0191000AK066651.1-Anther ethylene-upregulated protein ER1 (Fragment)1e-16At5g09410EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.896.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.995.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.895.7GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1001GO:0006635A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).Link to AmiGO
0.0801GO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).Link to AmiGO
0.0611GO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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