CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0801900

Gene name
Homology with Arabidopsis Similar to At1g55140: RNA binding / ribonuclease III (HF=7e-1)

Module size 6 genes

NF 0.56

%ile 75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.89 Os03g0801900 AK106415.1 - Protein of unknown function DUF569 family protein 7e-1 At1g55140 RNA binding / ribonuclease III O.I. H.G. S.X.
0.83 95.8 0.88 Os03g0710000 AK104418.1 - Eukaryotic protein of unknown function DUF292domain containing protein 3e+0 At4g33740 unknown protein O.I. H.G. S.X.
0.60 79.7 0.90 Os02g0180700 AK070746.1 - Cinnamoyl-CoA reductase (EC 1.2.1.44) 7e-7 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) O.I. H.G. S.X.
0.59 78.0 0.90 Os03g0767000 AB116527.1 - Allene oxide synthase (EC 4.2.1.92) 1e+0 At3g03550 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.46 60.9 0.90 Os03g0207400 AK072292.1 - Protein phosphatase 2C-like domain containingprotein 6e-5 At5g66080 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.30 32.7 0.89 Os11g0163800 AK105532.1 - Protein of unknown function DUF793 family protein 9e-1 At4g08380 proline-rich extensin-like family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.038 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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