CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0800500

Gene name
Homology with Arabidopsis Similar to At1g78410: VQ motif-containing protein (HF=2e-1)

Module size 7 genes

NF 0.22

%ile 20.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.93 Os03g0800500 AK070229.1 - - 2e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.33 38.8 0.93 Os02g0816100 AK060021.1 - HAD-superfamily hydrolase, subfamily IA, variant 1protein 2e+0 At4g26240 unknown protein O.I. H.G. S.X.
0.33 38.8 0.94 Os05g0150800 AK103505.1 - C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5) 3e-18 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.20 16.5 0.94 Os08g0557400 AK060067.1 - Protein tyrosine phosphatase-like protein 9e-3 At3g44620 protein tyrosine phosphatase O.I. H.G. S.X.
0.18 13.7 0.93 Os04g0303900 AK108051.1 - Endothelial monocyte-activating polypeptide IIprecursor pro-EMAP II family protein 2e+0 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.14 9.3 0.93 Os05g0200100 AK061208.1 - Thioredoxin-related domain containing protein 3e-30 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.11 6.5 0.93 Os01g0693900 AK099894.1 - Peptidyl-tRNA hydrolase family protein 1e-8 At1g18440 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0009396 The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
0.038 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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