CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0800000

Gene name
Homology with Arabidopsis Similar to At2g39210: nodulin family protein (HF=3e-4)

Module size 6 genes

NF 0.33

%ile 37.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.79 Os03g0800000 AK064790.1 - Conserved hypothetical protein 3e-4 At2g39210 nodulin family protein O.I. H.G. S.X.
0.67 87.2 0.79 Os12g0638300 AK068058.1 - Nitrate transporter NRT1-5 (Fragment) 3e-1 At1g30475 - O.I. H.G. S.X.
0.40 51.1 0.84 Os07g0667300 AK120101.1 - Zn-finger, CONSTANS type domain containing protein 5e-5 At2g22100 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.40 51.1 0.85 Os01g0556700 BM038703 - Dicarboxylate transporter 7e-11 At2g26690 nitrate transporter (NTP2) O.I. H.G. S.X.
0.22 19.4 0.83 Os06g0601500 CA764046 - ab initio prediction with EST support 1e-9 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) O.I. H.G. S.X.
0.11 6.5 0.79 Os04g0457500 AU075570 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.034 1 GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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