CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0782200

Gene name
Homology with Arabidopsis Similar to At5g53588: CPuORF50 (Conserved peptide upstream open reading frame 50) (HF=1e+1)

Module size 6 genes

NF 0.51

%ile 67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.93 Os03g0782200 AK069119.1 - Conserved hypothetical protein 1e+1 At5g53588 CPuORF50 (Conserved peptide upstream open reading frame 50) O.I. H.G. S.X.
0.60 79.7 0.93 Os05g0161500 AK058438.1 - RelA/SpoT domain containing protein 4e+0 At1g05990 calcium-binding protein, putative O.I. H.G. S.X.
0.46 60.9 0.93 Os08g0139700 CB617889 - Terpene synthase-like domain containing protein 2e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.40 51.1 0.93 Os12g0226900 AK060453.1 - Allyl alcohol dehydrogenase 7e-7 At5g16970 AT-AER (alkenal reductase) O.I. H.G. S.X.
0.36 44.0 0.94 Os01g0279100 AK059435.1 - Basic leucine zipper transcription factor CAT103(Fragment) 1e-114 At3g56940 CRD1 (COPPER RESPONSE DEFECT 1) O.I. H.G. S.X.
0.25 24.1 0.94 Os11g0267000 AK061014.1 - GUN4-like domain containing protein 4e-2 At3g50550 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.2 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0015969 The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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