CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0770000

Gene name
Homology with Arabidopsis Similar to At5g23411: unknown protein (HF=1e+1)

Module size 15 genes

NF 0.27

%ile 26.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 96.1 0.96 Os03g0770000 9631.m05471 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 1e+1 At5g23411 unknown protein O.I. H.G. S.X.
0.42 53.9 0.97 Os01g0272100 9629.m01650 - - 7e+0 At3g11260 WOX5 (WUSCHEL RELATED HOMEOBOX 5) O.I. H.G. S.X.
0.38 46.9 0.98 Os09g0519000 AK111425.1 - Conserved hypothetical protein 3e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.37 45.0 0.97 Os06g0703600 AK110999.1 - 26S proteasome non-ATPase regulatory subunit 14(26S proteasome regulatory subunit rpn11) 1e-2 At5g23540 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.35 41.7 0.98 Os03g0312500 AK109328.1 - Inhibitor of apoptosis-like protein 1e+1 At5g61340 unknown protein O.I. H.G. S.X.
0.32 36.3 0.98 Os05g0583550 NM_191268.1 - - 7e-1 At1g47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) O.I. H.G. S.X.
0.32 36.3 0.98 Os11g0520201 9639.m02910 - - 8e-2 At2g35960 NHL12 O.I. H.G. S.X.
0.29 31.1 0.98 Os02g0328200 AK064617.1 - Conserved hypothetical protein 3e-5 At4g36170 unknown protein O.I. H.G. S.X.
0.28 31.1 0.98 Os06g0572766 9634.m03579 - - 7e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) O.I. H.G. S.X.
0.26 25.6 0.98 Os02g0216900 9630.m01136 - - 6e-1 At3g01910 SOX (SULFITE OXIDASE) O.I. H.G. S.X.
0.23 21.2 0.98 Os03g0675000 AK063092.1 - Conserved hypothetical protein 9e-1 At4g24240 WRKY7 O.I. H.G. S.X.
0.21 17.9 0.97 Os10g0384800 9638.m02044 - - 1e+1 At1g14900 HMGA (HIGH MOBILITY GROUP A) O.I. H.G. S.X.
0.21 17.9 0.98 Os02g0707500 AK107442.1 - Conserved hypothetical protein 6e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.19 15.1 0.97 Os02g0507800 9630.m02913 - - 6e-1 At2g03130 ribosomal protein L12 family protein O.I. H.G. S.X.
0.10 5.7 0.97 Os01g0804000 9629.m05790 - - 3e+0 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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