CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0758800

Gene name
Homology with Arabidopsis Similar to At1g69410: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) (HF=7e-31)

Module size 13 genes

NF 0.65

%ile 87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.97 Os03g0758800 AK060387.1 - Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) 7e-31 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) O.I. H.G. S.X.
0.80 94.6 0.98 Os05g0445500 AK121459.1 - 60S acidic ribosomal protein P2B 4e-10 At2g27720 60S acidic ribosomal protein P2 (RPP2A) O.I. H.G. S.X.
0.77 93.1 0.99 Os12g0567700 AK070647.1 - - 5e-75 At2g18020 EMB2296 (embryo defective 2296) O.I. H.G. S.X.
0.75 91.9 0.98 Os02g0519900 AK100313.1 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0177400 AK103738.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.65 83.8 0.98 Os02g0717800 AK105284.1 - Ribosomal protein L31e domain containing protein 3e-10 At5g56710 60S ribosomal protein L31 (RPL31C) O.I. H.G. S.X.
0.64 83.4 0.98 Os03g0234200 D12629.1 - Ubiquitin fused to ribosomal protein L40 3e-45 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) O.I. H.G. S.X.
0.61 81.2 0.99 Os03g0345200 D12633.1 - 40S ribosomal protein S21 3e-10 At5g27700 structural constituent of ribosome O.I. H.G. S.X.
0.61 81.2 0.98 Os03g0177500 D63583.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.55 73.7 0.98 Os01g0328400 AK061988.1 - Ubiquitin 7e-66 At2g47110 UBQ6 O.I. H.G. S.X.
0.52 69.6 0.99 Os10g0411700 AK058209.1 - Ribosomal protein S28 5e-3 At3g10090 40S ribosomal protein S28 (RPS28A) O.I. H.G. S.X.
0.48 63.7 0.99 Os05g0160200 L31941.1 - The start codon is not identified. 6e-74 At2g47110 UBQ6 O.I. H.G. S.X.
0.48 63.7 0.98 Os08g0558800 AK071249.1 - 60S ribosomal protein L10a-3 4e-63 At5g22440 60S ribosomal protein L10A (RPL10aC) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.4 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.053 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
0.050 1 GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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