CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0754200

Gene name
Homology with Arabidopsis Similar to At5g20110: dynein light chain, putative (HF=1e+0)

Module size 6 genes

NF 0.40

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.92 Os03g0754200 AK103031.1 - The start codon is not identified. 1e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.57 77.0 0.94 Os01g0502800 AK059957.1 - - 2e-1 At5g53720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.50 68.0 0.95 Os07g0228600 AK067554.1 - - 2e+0 At3g51510 unknown protein O.I. H.G. S.X.
0.38 46.9 0.93 Os02g0825600 AK066738.1 - Plasma membrane H+ ATPase (EC 3.6.3.6) 8e-14 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) O.I. H.G. S.X.
0.27 27.5 0.93 Os06g0720500 AK120098.1 - Homeobox leucine-zipper protein 6e-7 At1g52150 ATHB-15 O.I. H.G. S.X.
0.17 12.6 0.93 Os08g0347200 AK058279.1 - Hypothetical protein 7e-1 At4g08874 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.6 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.5 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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