CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0751100

Gene name
Homology with Arabidopsis Similar to At4g16370: ATOPT3 (OLIGOPEPTIDE TRANSPORTER) (HF=5e-28)

Module size 6 genes

NF 0.77

%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.74 Os03g0751100 BU673383 - - 5e-28 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) O.I. H.G. S.X.
0.80 94.6 0.85 Os07g0258400 AK103557.1 - Metal transporter Nramp6 (AtNramp6) 2e-8 At1g80830 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) O.I. H.G. S.X.
0.71 89.6 0.74 Os12g0282000 AK103636.1 - Hypothetical protein 8e+0 At5g63634 unknown protein O.I. H.G. S.X.
0.67 87.2 0.81 Os03g0379300 AK068704.1 - - 1e-1 At4g26940 galactosyltransferase family protein O.I. H.G. S.X.
0.60 79.7 0.81 Os11g0262600 AB053296.1 - Hypothetical protein 2e+0 At3g49120 PRXCB (PEROXIDASE CB) O.I. H.G. S.X.
0.55 73.7 0.84 Os01g0655500 AK120660.1 - Protein kinase domain containing protein 1e-10 At5g53450 ORG1 (OBP3-responsive gene 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage