CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0745500

Gene name
Homology with Arabidopsis Similar to At3g05570: unknown protein (HF=1e-1)

Module size 30 genes

NF 0.37

%ile 42.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.91 Os03g0745500 9631.m05236 - Conserved hypothetical protein 1e-1 At3g05570 unknown protein O.I. H.G. S.X.
0.60 79.7 0.96 Os01g0696000 AK066735.1 - - 2e+0 At5g53930 unknown protein O.I. H.G. S.X.
0.53 71.3 0.95 Os03g0757400 AK105674.1 - Conserved hypothetical protein 2e-1 At3g42310 unknown protein O.I. H.G. S.X.
0.53 71.3 0.96 Os05g0463400 AK100354.1 - Hypothetical protein 5e-3 At1g13910 leucine-rich repeat family protein O.I. H.G. S.X.
0.46 60.9 0.95 Os02g0294100 AK106048.1 - - 4e-5 At4g25640 MATE efflux family protein O.I. H.G. S.X.
0.46 60.9 0.94 Os08g0520100 AK120052.1 - Pseudouridine synthase domain containing protein 3e-4 At1g78910 pseudouridine synthase family protein O.I. H.G. S.X.
0.44 58.1 0.96 Os01g0867100 AK066461.1 - Hypothetical protein 5e+0 At4g24370 unknown protein O.I. H.G. S.X.
0.44 58.1 0.94 Os02g0126900 9630.m00248 - Phosphatidate cytidylyltransferase family protein 4e-17 At2g45150 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.41 52.4 0.93 Os01g0379400 AK110939.1 - F-box protein 3e-1 At5g48270 unknown protein O.I. H.G. S.X.
0.40 51.1 0.95 Os05g0172100 AK068467.1 - F-box protein interaction domain containingprotein 2e-1 At4g38370 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.39 48.3 0.97 Os03g0816000 9631.m05921 - Conserved hypothetical protein 9e-6 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.39 48.3 0.96 Os09g0521700 AK064507.1 - Hypothetical protein 2e+0 At5g22080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.35 41.7 0.95 Os07g0619700 NM_189847.1 - Hypothetical protein 8e-1 At3g30220 unknown protein O.I. H.G. S.X.
0.35 41.7 0.97 Os10g0575800 AK120242.1 - ARM repeat fold domain containing protein 6e-1 At4g36791 unknown protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0907400 AK068952.1 - Transcription factor jumonji, JmjN domaincontaining protein 9e-6 At3g48430 REF6 (RELATIVE OF EARLY FLOWERING 6) O.I. H.G. S.X.
0.34 40.0 0.94 Os05g0209400 AK064744.1 - NUDIX hydrolase domain containing protein 8e-3 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) O.I. H.G. S.X.
0.33 38.8 0.95 Os08g0171000 AK071278.1 - Conserved hypothetical protein 3e+0 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative O.I. H.G. S.X.
0.31 34.5 0.97 Os02g0591600 AK060151.1 - WD40-like domain containing protein 1e-1 At2g37190 60S ribosomal protein L12 (RPL12A) O.I. H.G. S.X.
0.30 32.7 0.95 Os01g0520600 AK102351.1 - Disease resistance protein family protein 8e+0 Atmg00600 - O.I. H.G. S.X.
0.30 32.7 0.96 Os07g0229100 AK070112.1 - Cyclin-like F-box domain containing protein 3e-1 At3g45500 - O.I. H.G. S.X.
0.29 31.1 0.96 Os07g0606500 AK070274.1 - ATP-dependent RNA helicase, eIF-4A family 8e-6 At5g08110 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.29 31.1 0.96 Os11g0661000 AK066047.1 - TPR-like domain containing protein 9e-3 At4g14050 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.29 31.1 0.95 Os04g0475300 AK066351.1 - Conserved hypothetical protein 4e+0 At1g21950 unknown protein O.I. H.G. S.X.
0.28 31.1 0.96 Os02g0637900 AK110708.1 - Conserved hypothetical protein 2e-31 At1g73350 unknown protein O.I. H.G. S.X.
0.27 27.5 0.97 Os01g0263600 AK101040.1 - U5 snRNP-associated 102 kDa protein (U5-102 kDaprotein) 5e-29 At4g03430 EMB2770 (EMBRYO DEFECTIVE 2770) O.I. H.G. S.X.
0.27 27.5 0.96 Os04g0606900 AK060169.1 - Protein of unknown function DUF163 family protein 2e+0 At5g62980 dihydroneopterin aldolase, putative O.I. H.G. S.X.
0.24 22.4 0.95 Os03g0334000 AK072649.1 - Ribosomal protein S6 kinase 2e-42 At3g08720 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) O.I. H.G. S.X.
0.23 21.2 0.97 Os12g0127500 AK064595.1 - - 3e-3 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.23 21.2 0.97 Os05g0317300 AK064846.1 - FAR1 domain containing protein 4e-1 At5g25750 unknown protein O.I. H.G. S.X.
0.14 9.3 0.96 Os08g0485600 AK064883.1 - Zn-finger, C2H2 type domain containing protein 2e+0 At3g60420 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.91	Os03g0745500	9631.m05236	-	Conserved hypothetical protein	1e-1	At3g05570	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.96	Os01g0696000	AK066735.1	-	-	2e+0	At5g53930	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os03g0757400	AK105674.1	-	Conserved hypothetical protein	2e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.96	Os05g0463400	AK100354.1	-	Hypothetical protein	5e-3	At1g13910	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os02g0294100	AK106048.1	-	-	4e-5	At4g25640	MATE efflux family protein	O.I.	H.G.	S.X.
0.46	60.9	0.94	Os08g0520100	AK120052.1	-	Pseudouridine synthase domain containing protein	3e-4	At1g78910	pseudouridine synthase family protein	O.I.	H.G.	S.X.
0.44	58.1	0.96	Os01g0867100	AK066461.1	-	Hypothetical protein	5e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.94	Os02g0126900	9630.m00248	-	Phosphatidate cytidylyltransferase family protein	4e-17	At2g45150	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.
0.41	52.4	0.93	Os01g0379400	AK110939.1	-	F-box protein	3e-1	At5g48270	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.95	Os05g0172100	AK068467.1	-	F-box protein interaction domain containingprotein	2e-1	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os03g0816000	9631.m05921	-	Conserved hypothetical protein	9e-6	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.39	48.3	0.96	Os09g0521700	AK064507.1	-	Hypothetical protein	2e+0	At5g22080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os07g0619700	NM_189847.1	-	Hypothetical protein	8e-1	At3g30220	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os10g0575800	AK120242.1	-	ARM repeat fold domain containing protein	6e-1	At4g36791	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os01g0907400	AK068952.1	-	Transcription factor jumonji, JmjN domaincontaining protein	9e-6	At3g48430	REF6 (RELATIVE OF EARLY FLOWERING 6)	O.I.	H.G.	S.X.
0.34	40.0	0.94	Os05g0209400	AK064744.1	-	NUDIX hydrolase domain containing protein	8e-3	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os08g0171000	AK071278.1	-	Conserved hypothetical protein	3e+0	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os02g0591600	AK060151.1	-	WD40-like domain containing protein	1e-1	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.
0.30	32.7	0.95	Os01g0520600	AK102351.1	-	Disease resistance protein family protein	8e+0	Atmg00600	-	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os07g0229100	AK070112.1	-	Cyclin-like F-box domain containing protein	3e-1	At3g45500	-	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os07g0606500	AK070274.1	-	ATP-dependent RNA helicase, eIF-4A family	8e-6	At5g08110	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os11g0661000	AK066047.1	-	TPR-like domain containing protein	9e-3	At4g14050	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os04g0475300	AK066351.1	-	Conserved hypothetical protein	4e+0	At1g21950	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os02g0637900	AK110708.1	-	Conserved hypothetical protein	2e-31	At1g73350	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os01g0263600	AK101040.1	-	U5 snRNP-associated 102 kDa protein (U5-102 kDaprotein)	5e-29	At4g03430	EMB2770 (EMBRYO DEFECTIVE 2770)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os04g0606900	AK060169.1	-	Protein of unknown function DUF163 family protein	2e+0	At5g62980	dihydroneopterin aldolase, putative	O.I.	H.G.	S.X.
0.24	22.4	0.95	Os03g0334000	AK072649.1	-	Ribosomal protein S6 kinase	2e-42	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os12g0127500	AK064595.1	-	-	3e-3	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os05g0317300	AK064846.1	-	FAR1 domain containing protein	4e-1	At5g25750	unknown protein	O.I.	H.G.	S.X.
0.14	9.3	0.96	Os08g0485600	AK064883.1	-	Zn-finger, C2H2 type domain containing protein	2e+0	At3g60420	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.0	99.1	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.4	98.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.4	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 1 GO:0000398 The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
0.053 1 GO:0008654 The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.063	1	GO:0000398	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
0.053	1	GO:0008654	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os03g0745500
Gene name
Homology with Arabidopsis	Similar to At3g05570: unknown protein (HF=1e-1)
Module size	30 genes
NF	0.37
%ile	42.6

Co-expression analysis

Gene ID Os03g0745500 Gene name Homology with ArabidopsisSimilar to At3g05570: unknown protein (HF=1e-1) Module size 30 genes NF 0.37 %ile 42.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0745500

Gene name
Homology with Arabidopsis Similar to At3g05570: unknown protein (HF=1e-1)

Module size 30 genes

NF 0.37

%ile 42.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays