CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0742400

Gene name
Homology with Arabidopsis Similar to At5g64560: magnesium transporter CorA-like family protein (MRS2-2) (HF=6e-26)

Module size 9 genes

NF 0.43

%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.96 Os03g0742400 AK060249.1 - MRS2-7 6e-26 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) O.I. H.G. S.X.
0.63 82.7 0.96 Os12g0636800 AK071648.1 - Ubiquitin-conjugating enzyme 18 (Fragment) 5e-13 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) O.I. H.G. S.X.
0.53 71.3 0.96 Os01g0200000 AK067737.1 - - 1e-20 At5g61500 ATG3 O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0338200 AK068083.1 - Mov34/MPN/PAD-1 family protein 1e+0 At4g16144 - O.I. H.G. S.X.
0.46 60.9 0.96 Os06g0714000 AK069538.1 - Protein of unknown function UPF0183 family protein 1e-6 At3g51130 unknown protein O.I. H.G. S.X.
0.44 58.1 0.96 Os03g0120300 AK066854.1 - THH1 5e-14 At1g14530 THH1 (TOM THREE HOMOLOG 1) O.I. H.G. S.X.
0.37 45.0 0.96 Os01g0141100 AK062139.1 - ATPase of the AAA+ class 4e-52 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.27 27.5 0.96 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C O.I. H.G. S.X.
0.25 24.1 0.96 Os03g0681400 AK103809.1 - Ubiquitin-conjugating enzymes domain containingprotein 1e-13 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.4 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
7.8 97.6 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
7.6 97.5 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.2 97.4 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
5.6 96.9 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
5.3 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.6 96.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.033 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
0.027 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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