CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0740600

Gene name
Homology with Arabidopsis Similar to At5g05920: DHS (DEOXYHYPUSINE SYNTHASE) (HF=1e-15)

Module size 7 genes

NF 0.53

%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.96 Os03g0740600 AK101589.1 - Deoxyhypusine synthase (EC 2.5.1.46) 1e-15 At5g05920 DHS (DEOXYHYPUSINE SYNTHASE) O.I. H.G. S.X.
0.63 82.7 0.95 Os03g0685600 AK111863.1 - WD40-like domain containing protein 3e-3 At1g71840 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.60 79.7 0.96 Os02g0762300 AK106684.1 - PP-loop family protein 9e-47 At2g44270 ATP binding O.I. H.G. S.X.
0.57 77.0 0.96 Os01g0966300 AK073175.1 - Mitochondrial processing peptidase 2e-4 At1g51980 mitochondrial processing peptidase alpha subunit, putative O.I. H.G. S.X.
0.44 58.1 0.96 Os04g0482700 AK111072.1 - Conserved hypothetical protein 2e+0 At4g16710 glycosyltransferase family protein 28 O.I. H.G. S.X.
0.36 44.0 0.97 Os04g0630000 AK060199.1 - SDA1 domain containing protein 7e-8 At4g31520 SDA1 family protein O.I. H.G. S.X.
0.27 27.5 0.96 Os05g0277300 AK058300.1 - Peptide chain release factor 1 4e-27 At2g47020 peptide chain release factor, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.6 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008612 The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.
0.143 1 GO:0006415 The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage