CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0739700

Gene name
Homology with Arabidopsis Similar to At2g46160: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 11 genes

NF 0.69

%ile 91.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.66 Os03g0739700 AK062272.1 - Protein of unknown function DUF1334 family protein 6e-1 At2g46160 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.83 95.8 0.73 Os08g0177400 9636.m00746 - Hypothetical protein 1e+0 At2g26500 cytochrome b6f complex subunit (petM), putative O.I. H.G. S.X.
0.80 94.6 0.73 Os01g0627800 AK101750.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 1e-6 At3g14660 CYP72A13 O.I. H.G. S.X.
0.78 93.4 0.73 Os04g0206600 AK106302.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e-10 At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.78 93.4 0.81 Os01g0373700 AK107857.1 - Conserved hypothetical protein 5e+0 At5g59840 Ras-related GTP-binding family protein O.I. H.G. S.X.
0.75 91.9 0.80 Os01g0373800 AK107432.1 - Conserved hypothetical protein 1e+0 At2g36885 unknown protein O.I. H.G. S.X.
0.73 91.1 0.73 Os01g0145900 9629.m00449 - - 4e-2 At3g18050 unknown protein O.I. H.G. S.X.
0.64 83.4 0.79 Os04g0627900 AK108443.1 - The start codon is not identified. 8e-9 At5g54940 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.55 73.7 0.79 Os10g0344000 AK105578.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-2 At5g52450 MATE efflux protein-related O.I. H.G. S.X.
0.46 60.9 0.80 Os01g0696800 AK061435.1 - - 3e+0 At2g32710 KRP4 O.I. H.G. S.X.
0.44 58.1 0.80 Os02g0208300 AK073104.1 - PDR5-like ABC transporter 2e-15 At2g36380 PDR6 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.4 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.2 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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