Co-expression analysis

Gene ID Os03g0725900
Gene name
Homology with ArabidopsisSimilar to At4g16160: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (HF=7e-1)
Module size 17 genes
NF 0.57
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.97Os03g07259009631.m05041--7e-1At4g16160mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.7491.40.98Os05g01466009633.m00472--3e+0At4g31730GDU1 (GLUTAMINE DUMPER 1)O.I.H.G.S.X.
0.6787.20.98Os01g03123009629.m02003--2e+0At5g06660unknown proteinO.I.H.G.S.X.
0.6382.70.98Os03g0827200NM_185123.1-Retrotransposon gag protein family protein1e-1At3g30247-O.I.H.G.S.X.
0.6382.70.97Os07g04706009635.m02797--3e-1At4g30410transcription factorO.I.H.G.S.X.
0.6181.20.98Os06g06772009634.m04508--2e-1At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6079.70.98Os04g01821019632.m00904--8e+0At5g05300unknown proteinO.I.H.G.S.X.
0.5877.00.98Os01g06091329629.m04060--2e+0At1g20450ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)O.I.H.G.S.X.
0.5676.30.98Os08g0493100AK121365.1-Cyclin-like F-box domain containing protein1e+0At1g47370Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5573.70.98Os11g02585009639.m01407-Disease resistance protein family protein3e-1At3g16050A37O.I.H.G.S.X.
0.5471.90.98Os12g01962009640.m00883--3e+0At5g06030self-incompatibility protein-relatedO.I.H.G.S.X.
0.5471.90.98Os08g04922009636.m03870--4e-2At2g41260M17O.I.H.G.S.X.
0.5168.70.98Os07g01332009635.m00340--9e-1At1g33860unknown proteinO.I.H.G.S.X.
0.4863.70.99Os11g04358009639.m02201-Zn-finger, CCHC type domain containing protein6e-1Atmg00510-O.I.H.G.S.X.
0.3948.30.98Os06g03673009634.m02600--7e-2At3g55080SET domain-containing proteinO.I.H.G.S.X.
0.3338.80.98Os04g04410009632.m03472--5e-1At2g02490unknown proteinO.I.H.G.S.X.
0.3338.80.98Os06g01337009634.m00339--2e+0At5g02220unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.499.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
28.199.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.098.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0191GO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.Link to AmiGO
0.0181GO:0006278The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage