CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0723800

Gene name
Homology with Arabidopsis Similar to At5g05090: myb family transcription factor (HF=2e-3)

Module size 17 genes

NF 0.54

%ile 73.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.98 Os03g0723800 AK110710.1 - Hypothetical protein 2e-3 At5g05090 myb family transcription factor O.I. H.G. S.X.
0.64 83.4 0.99 Os02g0540000 AK107016.1 - Conserved hypothetical protein 4e+0 At4g11870 unknown protein O.I. H.G. S.X.
0.63 82.7 0.99 Os03g0702100 AK063307.1 - Conserved hypothetical protein 8e-1 At2g43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.62 81.5 0.99 Os03g0422200 AK107232.1 - Hypothetical protein 2e+0 At3g52561 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os04g0454400 9632.m00934 - - 4e-1 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) O.I. H.G. S.X.
0.60 79.7 0.99 Os01g0305701 NM_189299.1 - - 8e-1 At2g34870 MEE26 (maternal effect embryo arrest 26) O.I. H.G. S.X.
0.57 77.0 0.99 Os03g0611800 9637.m02957 - - 4e+0 At3g46070 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.54 71.9 0.99 Os08g0486000 AK108407.1 - Conserved hypothetical protein 1e+0 At4g05070 unknown protein O.I. H.G. S.X.
0.52 69.6 0.99 Os04g0564101 9632.m04603 - - 3e+0 At4g30370 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os03g0612200 9637.m00631 - - 2e-1 At3g61820 aspartyl protease family protein O.I. H.G. S.X.
0.48 63.7 0.99 Os12g0521200 9640.m03247 - - 3e-1 At1g63610 unknown protein O.I. H.G. S.X.
0.47 62.3 0.99 Os02g0784000 AK107441.1 - Conserved hypothetical protein 4e+0 At3g16020 phospholipase C O.I. H.G. S.X.
0.47 62.3 0.99 Os02g0232701 9630.m01281 - - 3e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.3 0.99 Os12g0447400 9640.m02499 - - 8e+0 Atcg00330 - O.I. H.G. S.X.
0.44 58.1 0.99 Os08g0515400 NM_188993.1 - - 5e-4 At1g76990 ACR3 O.I. H.G. S.X.
0.42 53.9 0.99 Os01g0153200 9629.m00526 - Ribosomal protein S8 family protein 7e-3 At1g63330 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.34 40.0 0.99 Os05g0448650 9633.m03477 - - 3e-1 At5g63530 ATFP3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	82.7	0.98	Os03g0723800	AK110710.1	-	Hypothetical protein	2e-3	At5g05090	myb family transcription factor	O.I.	H.G.	S.X.
0.64	83.4	0.99	Os02g0540000	AK107016.1	-	Conserved hypothetical protein	4e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os03g0702100	AK063307.1	-	Conserved hypothetical protein	8e-1	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.
0.62	81.5	0.99	Os03g0422200	AK107232.1	-	Hypothetical protein	2e+0	At3g52561	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os04g0454400	9632.m00934	-	-	4e-1	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.
0.60	79.7	0.99	Os01g0305701	NM_189299.1	-	-	8e-1	At2g34870	MEE26 (maternal effect embryo arrest 26)	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os03g0611800	9637.m02957	-	-	4e+0	At3g46070	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.54	71.9	0.99	Os08g0486000	AK108407.1	-	Conserved hypothetical protein	1e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.99	Os04g0564101	9632.m04603	-	-	3e+0	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os03g0612200	9637.m00631	-	-	2e-1	At3g61820	aspartyl protease family protein	O.I.	H.G.	S.X.
0.48	63.7	0.99	Os12g0521200	9640.m03247	-	-	3e-1	At1g63610	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os02g0784000	AK107441.1	-	Conserved hypothetical protein	4e+0	At3g16020	phospholipase C	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os02g0232701	9630.m01281	-	-	3e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os12g0447400	9640.m02499	-	-	8e+0	Atcg00330	-	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os08g0515400	NM_188993.1	-	-	5e-4	At1g76990	ACR3	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os01g0153200	9629.m00526	-	Ribosomal protein S8 family protein	7e-3	At1g63330	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os05g0448650	9633.m03477	-	-	3e-1	At5g63530	ATFP3	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
47.9	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.4	98.5	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os03g0723800
Gene name
Homology with Arabidopsis	Similar to At5g05090: myb family transcription factor (HF=2e-3)
Module size	17 genes
NF	0.54
%ile	73.1

Co-expression analysis

Gene ID Os03g0723800 Gene name Homology with ArabidopsisSimilar to At5g05090: myb family transcription factor (HF=2e-3) Module size 17 genes NF 0.54 %ile 73.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0723800

Gene name
Homology with Arabidopsis Similar to At5g05090: myb family transcription factor (HF=2e-3)

Module size 17 genes

NF 0.54

%ile 73.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays