CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0718600

Gene name
Homology with Arabidopsis Similar to At1g02410: cytochrome c oxidase assembly protein CtaG / Cox11 family (HF=5e-45)

Module size 7 genes

NF 0.32

%ile 35.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.95 Os03g0718600 AK106450.1 - Cytochrome c oxidase assembly protein CtaG/Cox11family protein 5e-45 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family O.I. H.G. S.X.
0.46 60.9 0.95 Os10g0479600 AK063255.1 - Protein of unknown function UPF0108 family protein 4e-4 At3g59280 TXR1 (THAXTOMIN A RESISTANT 1) O.I. H.G. S.X.
0.44 58.1 0.96 Os04g0438500 AK068396.1 - Conserved hypothetical protein 1e-5 At1g21370 unknown protein O.I. H.G. S.X.
0.33 38.8 0.96 Os07g0476500 AK066346.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 1e-5 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein O.I. H.G. S.X.
0.24 22.4 0.95 Os03g0742400 AK060249.1 - MRS2-7 6e-26 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) O.I. H.G. S.X.
0.23 21.2 0.95 Os09g0372800 AK112000.1 - Protein kinase domain containing protein 3e-9 At5g08160 ATPK3 O.I. H.G. S.X.
0.20 16.5 0.95 Os07g0647800 AK111992.1 - Conserved hypothetical protein 2e-7 At1g63900 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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