CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0704100

Gene name
Homology with Arabidopsis Similar to At1g35410: - (HF=2e+0)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.67 87.2 0.96 Os10g0419500 AK071316.1 - Acireductone dioxygenase, ARD family protein 2e-10 At5g43850 ARD4 O.I. H.G. S.X.
0.67 87.2 0.97 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - O.I. H.G. S.X.
0.60 79.7 0.97 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.
0.50 68.0 0.97 Os11g0242400 AK067025.1 - Rieske [2Fe-2S] region domain containing protein 1e-1 At1g71500 Rieske (2Fe-2S) domain-containing protein O.I. H.G. S.X.
0.38 46.9 0.97 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.97	Os03g0704100	AK070474.1	-	PAP fibrillin family protein	2e+0	At1g35410	-	O.I.	H.G.	S.X.
0.67	87.2	0.96	Os10g0419500	AK071316.1	-	Acireductone dioxygenase, ARD family protein	2e-10	At5g43850	ARD4	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os07g0656700	AU173917	-	Protein of unknown function DUF1334 family protein	4e-11	At5g13720	-	O.I.	H.G.	S.X.
0.60	79.7	0.97	Os03g0128800	AK066570.1	-	Conserved hypothetical protein	7e-1	At1g23530	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.97	Os11g0242400	AK067025.1	-	Rieske [2Fe-2S] region domain containing protein	1e-1	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os01g0912700	AK068528.1	-	Conserved hypothetical protein	1e-1	At2g01340	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.59	78.0	0.95	Os03g0284600	AK110712.1	-	Conserved hypothetical protein	1e-1	At2g37240	-	O.I.	H.G.	S.X.
0.56	76.3	0.95	Os02g0556800	AK100187.1	-	Conserved hypothetical protein	3e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.56	76.3	0.95	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os02g0197200	AK066134.1	-	Mlo-related protein family protein	1e-2	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os06g0472000	AK063588.1	-	Mss4-like domain containing protein	3e-11	At1g53670	MSRB1 (methionine sulfoxide reductase B 1)	O.I.	H.G.	S.X.
0.53	71.3	0.96	Os04g0644600	AK099966.1	-	Epoxide hydrolase family protein	4e-21	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.50	68.0	0.93	Os08g0138900	9636.m00366	-	Conserved hypothetical protein	2e+0	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.48	63.7	0.95	Os03g0838900	AK066994.1	-	Conserved hypothetical protein	9e-3	At4g09620	-	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os01g0585300	AK099180.1	-	Protein of unknown function DUF1118 family protein	5e-3	At1g74730	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.94	Os09g0296800	AK066997.1	-	Chlorophyll A-B binding protein family protein	2e-1	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.
0.43	55.4	0.94	Os11g0216100	AK059179.1	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	5e-1	At2g28660	copper-binding family protein	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os11g0603200	AK059060.1	-	ABCF-type protein	1e-19	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os07g0171100	AK066475.1	-	TPR-like domain containing protein	2e-16	At1g55480	binding / protein binding	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os06g0597900	AK065544.1	-	-	3e-6	At5g20140	SOUL heme-binding family protein	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os07g0614000	AK109489.1	-	Strictosidine synthase family protein	3e+0	At5g66090	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os03g0308800	AK066789.1	-	TPR-like domain containing protein	4e-7	At3g17040	HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os04g0639300	AK058483.1	-	Conserved hypothetical protein	2e-5	At2g21960	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os12g0124000	AK059747.1	-	SMAD/FHA domain containing protein	5e-1	At5g08400	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.91	Os03g0703300	AK073831.1	-	Calponin-like actin-binding domain containingprotein	1e+0	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os04g0657300	CB624212	-	Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)	2e-1	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os09g0250700	AK120335.1	-	ABC-1 domain containing protein	4e-19	At3g07700	ABC1 family protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os02g0285800	AK099035.1	-	GTP-binding protein TypA family protein	4e-62	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.
0.35	41.7	0.92	Os04g0412100	AK108223.1	-	Conserved hypothetical protein	2e+0	At1g80940	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.90	Os07g0561500	9635.m03710	-	Brn1-like protein	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os04g0403500	AK103149.1	-	-	1e-11	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os08g0101700	AK061172.1	-	Cytochrome b561	1e-1	At1g13930	-	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os09g0460400	AK067180.1	-	Esterase/lipase/thioesterase domain containingprotein	9e+0	At5g06570	hydrolase	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os11g0432400	AK068090.1	-	2-oxoglutarate/malate translocator	2e-13	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os03g0744700	AK071178.1	-	Conserved hypothetical protein	4e-2	At1g62250	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os02g0130100	AK121866.1	-	SNO glutamine amidotransferase family protein	2e-10	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os01g0719700	CB646480	-	[4Fe-4S] cluster assembly factor	5e-24	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	O.I.	H.G.	S.X.
0.32	36.3	0.95	Os10g0530500	AF402800.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	1e-1	At3g09270	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	O.I.	H.G.	S.X.
0.31	34.5	0.94	Os07g0196200	AK070765.1	-	Conserved hypothetical protein	1e-1	At4g23890	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os07g0626400	AK100600.1	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	3e-21	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.30	32.7	0.93	Os08g0109300	AK066688.1	-	Adenylate kinase, chloroplast (EC 2.7.4.3)(ATP-AMP transphosphorylase)	8e-10	At5g47840	AMK2 (Adenosine monophosphate kinase)	O.I.	H.G.	S.X.
0.30	32.7	0.94	Os04g0657500	AK066638.1	-	Lipase, class 3 family protein	1e+0	At3g17100	transcription factor	O.I.	H.G.	S.X.
0.30	32.7	0.94	Os05g0555300	AK062997.1	-	Ferredoxin domain containing protein	2e-12	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os02g0593500	AK067498.1	-	-	6e-18	At3g26570	PHT2	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os12g0628100	AK121150.1	-	Actin depolymerizing factor (ADF) (Fragment)	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os10g0563600	AK109715.1	-	Peptide methionine sulfoxide reductase (EC1.8.4.6) (Protein- methionine-S-oxide reductase) (PeptideMet(O) reductase)	2e-1	At3g47550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os02g0705100	AK063491.1	-	Epoxide hydrolase family protein	2e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os01g0866400	BU667041	-	Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment)	8e-38	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os01g0734600	AK103129.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-3	At1g70470	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os04g0448600	AK068709.1	-	ChaC-like protein family protein	2e-3	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.
0.28	31.1	0.91	Os03g0826200	AK121165.1	-	Hypothetical protein	3e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.28	31.1	0.94	Os05g0170900	CB679962	-	Phosphate/phosphoenolpyruvate translocator	1e-1	At2g30766	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os11g0216300	AK067129.1	-	ABC-1 domain containing protein	8e-76	At4g31390	ABC1 family protein	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os08g0432500	AK106170.1	-	ATP-dependent Clp protease adaptor protein ClpSfamily protein	3e-2	At3g61678	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.89	Os01g0173000	9629.m00715	-	Putative thiol-disulphide oxidoreductase DCCfamily protein	4e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.5 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.6 97.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
16.5	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.6	97.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
5.3	96.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9	96.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5	96.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4	96.2	GSM159197	Inflorescence (P3, 5 - 10 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
4.4	96.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0	95.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8	95.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os03g0704100
Gene name
Homology with Arabidopsis	Similar to At1g35410: - (HF=2e+0)
Module size	6 genes
NF	0.67
%ile	90.0

Co-expression analysis

Gene ID Os03g0704100 Gene name Homology with ArabidopsisSimilar to At1g35410: - (HF=2e+0) Module size 6 genes NF 0.67 %ile 90.0

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0704100

Gene name
Homology with Arabidopsis Similar to At1g35410: - (HF=2e+0)

Module size 6 genes

NF 0.67

%ile 90.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays