CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0704100

Gene name
Homology with Arabidopsis Similar to At1g35410: - (HF=2e+0)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.67 87.2 0.96 Os10g0419500 AK071316.1 - Acireductone dioxygenase, ARD family protein 2e-10 At5g43850 ARD4 O.I. H.G. S.X.
0.67 87.2 0.97 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - O.I. H.G. S.X.
0.60 79.7 0.97 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.
0.50 68.0 0.97 Os11g0242400 AK067025.1 - Rieske [2Fe-2S] region domain containing protein 1e-1 At1g71500 Rieske (2Fe-2S) domain-containing protein O.I. H.G. S.X.
0.38 46.9 0.97 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.5 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.6 97.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.66625.1.S1_at, orthologous to the query gene, Os03g0704100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 TaAffx.66625.1.S1_at At1g35410 - - 8e-2 At1g14060 - O.I. H.G. S.X.
0.80 92.2 TaAffx.112453.1.S1_s_at At1g35410 - - 1e-1 At1g76820 GTP binding / GTPase O.I. H.G. S.X.
0.71 88.0 Ta.1672.1.S1_x_at At1g35410 - - 3e-6 At2g24790 COL3 (CONSTANS-LIKE 3) O.I. H.G. S.X.
0.55 76.8 Ta.22404.1.S1_at At1g35410 - - 2e-7 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) O.I. H.G. S.X.
0.55 76.8 TaAffx.112453.1.S1_at At1g35410 - - 1e-1 At1g76820 GTP binding / GTPase O.I. H.G. S.X.
0.40 58.4 Ta.23765.1.S1_at At1g35410 - - 2e-4 At4g15545 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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