CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0701200

Gene name
Homology with Arabidopsis Similar to At5g02230: haloacid dehalogenase-like hydrolase family protein (HF=6e-1)

Module size 8 genes

NF 0.38

%ile 45.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.86 Os03g0701200 AK099563.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.57 77.0 0.85 Os07g0245100 AK100710.1 - Nitrogen fixation protein 8e-48 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.40 51.1 0.90 Os05g0542200 AK071306.1 - Epoxide hydrolase family protein 7e-2 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.33 38.8 0.89 Os10g0207400 AK120253.1 - Conserved hypothetical protein 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.30 32.7 0.89 Os02g0790500 AK066691.1 - Glycosyl transferase, family 20 domain containingprotein 3e-11 At1g68020 ATTPS6 O.I. H.G. S.X.
0.30 32.7 0.89 Os01g0314100 AK067157.1 - Catalytic domain of components of variousdehydrogenase complexes containing protein 3e-7 At3g06850 BCE2 O.I. H.G. S.X.
0.29 31.1 0.89 Os05g0569300 AK065440.1 - G-box binding factor 1 2e-1 At2g47530 - O.I. H.G. S.X.
0.21 17.9 0.89 Os05g0176700 AK071729.1 - Conserved hypothetical protein 6e-6 At5g23100 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.2 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.9 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
0.039 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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