Co-expression analysis

Gene ID Os03g0700700
Gene name
Homology with ArabidopsisSimilar to At3g22400: LOX5 (HF=3e-5)
Module size 6 genes
NF 0.10
%ile 7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3846.90.88Os03g0700700AK072689.1-Lipoxygenase (EC 1.13.11.12)3e-5At3g22400LOX5O.I.H.G.S.X.
0.2931.10.89Os11g0704600AK100931.1-Glycoside hydrolase, family 17 protein8e-1At1g66870glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.1712.60.87Os06g0256300AK105344.1-Calmodulin-binding heat-shock protein6e-11At5g37710lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeO.I.H.G.S.X.
0.127.20.87Os02g0743200AK108304.1-Hypothetical protein7e-3At3g48020-O.I.H.G.S.X.
0.073.70.87Os02g0119600AK107964.1-Conserved hypothetical protein3e-2At1g76250unknown proteinO.I.H.G.S.X.
0.031.40.86Os07g0551400AK109507.1-Universal stress protein (Usp) family protein1e-11At1g11360universal stress protein (USP) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.299.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.297.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.396.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.096.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.896.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.796.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0541GO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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