CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0692000

Gene name
Homology with Arabidopsis Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=7e-4)

Module size 10 genes

NF 0.63

%ile 84.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.97 Os03g0692000 9631.m04726 - Glycosyl transferase, family 14 protein 7e-4 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.84 96.0 0.98 Os04g0257500 AK107745.1 - Ethylene-responsive element binding protein 7e-3 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) O.I. H.G. S.X.
0.80 94.6 0.97 Os08g0418400 9636.m03229 - - 7e-4 At1g30475 - O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0162300 AK110675.1 - Hypothetical protein 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.64 83.4 0.98 Os04g0232500 9632.m01461 - - 1e+0 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) O.I. H.G. S.X.
0.59 78.0 0.98 Os12g0511700 9640.m03180 - - 1e-1 At3g03030 F-box family protein O.I. H.G. S.X.
0.56 76.3 0.98 Os01g0756800 NM_191290.1 - - 1e+1 At5g02280 synbindin, putative O.I. H.G. S.X.
0.55 73.7 0.98 Os01g0288100 NM_183572.1 - - 1e-1 At1g07175 unknown protein O.I. H.G. S.X.
0.47 62.3 0.98 Os11g0687700 9639.m04295 - - 3e+0 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) O.I. H.G. S.X.
0.40 51.1 0.98 Os04g0438900 9632.m03451 - - 3e-1 At5g51812 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
74.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.7 99.1 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
14.7 98.6 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage