CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0691400

Gene name
Homology with Arabidopsis Similar to At5g48950: thioesterase family protein (HF=1e-4)

Module size 7 genes

NF 0.13

%ile 10.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.90 Os03g0691400 AK071319.1 - Thioesterase superfamily domain containing protein 1e-4 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.40 51.1 0.90 Os07g0656800 AK099536.1 - Conserved hypothetical protein 3e+0 At5g66470 GTP binding / RNA binding O.I. H.G. S.X.
0.31 34.5 0.91 Os07g0657400 CB633791 - Protein of unknown function DUF563 family protein 7e-5 At2g41640 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.29 31.1 0.91 Os03g0249700 AK120462.1 - - 2e+0 At4g39360 unknown protein O.I. H.G. S.X.
0.22 19.4 0.94 Os06g0175500 AK058599.1 - Epsin, N-terminal domain containing protein 8e-11 At5g35200 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.91 Os06g0238300 AK107758.1 - FMN-binding split barrel domain containing protein 2e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) O.I. H.G. S.X.
0.04 2.0 0.91 Os01g0784800 AK059820.1 - Minor allergen 4e-14 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.1 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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