Co-expression analysis

Gene ID Os03g0690600
Gene name
Homology with ArabidopsisSimilar to At2g37650: scarecrow-like transcription factor 9 (SCL9) (HF=3e-2)
Module size 6 genes
NF 0.59
%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.96Os03g0690600AK101402.1-SCARECROW-like protein3e-2At2g37650scarecrow-like transcription factor 9 (SCL9)O.I.H.G.S.X.
0.6787.20.97Os01g0655400AK069873.1-Hypothetical protein1e-1At1g27590-O.I.H.G.S.X.
0.4660.90.97Os11g0533600CB643005-Hypothetical protein5e+0At4g35570HMGB5 (HIGH MOBILITY GROUP B 5)O.I.H.G.S.X.
0.4660.90.96Os07g0110400AK058681.1-ARM repeat fold domain containing protein1e-17At5g15540EMB2773 (EMBRYO DEFECTIVE 2773)O.I.H.G.S.X.
0.4458.10.97Os03g0441000AK070997.1-The start codon is not identified.7e-15At5g43130TAF4 (TBP-ASSOCIATED FACTOR 4)O.I.H.G.S.X.
0.4051.10.97Os01g0916300AK121997.1-PQBP-1 protein (Nuclear protein containing a WWdomain) (Npw38) (JM26 protein)2e-24At2g41020WW domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.899.4GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.796.4GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.696.3GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.995.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.895.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.595.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.495.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.395.1GSM35713314-day-old seedling, rep 2GSE14275Expression data for heat shock in rice seedlingsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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