Co-expression analysis

Gene ID Os03g0664300
Gene name
Homology with ArabidopsisSimilar to At5g03050: unknown protein (HF=7e-1)
Module size 8 genes
NF 0.58
%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5777.00.99Os03g06643009631.m04474--7e-1At5g03050unknown proteinO.I.H.G.S.X.
0.6787.20.99Os01g0740000AK111315.1-Hypothetical protein5e+0At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)O.I.H.G.S.X.
0.6382.70.99Os03g04211019631.m03013--2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.6079.70.99Os10g0417400NM_196508.1--1e+0At1g61353unknown proteinO.I.H.G.S.X.
0.6079.70.99Os05g0492200AF456243.1--6e-4At1g72150PATL1 (PATELLIN 1)O.I.H.G.S.X.
0.4762.30.99Os02g02465009630.m01387--9e-1At3g56400WRKY70O.I.H.G.S.X.
0.4051.10.99Os03g07038009631.m04848--2e-1At4g02340epoxide hydrolase, putativeO.I.H.G.S.X.
0.3644.00.99Os05g0537200AK121713.1-Myosin head, motor region domain containingprotein1e-42At1g17580MYA1 (MYOSIN 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.499.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.398.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.198.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0151GO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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