CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0650200

Gene name
Homology with Arabidopsis Similar to At5g63400: ADK1 (ADENYLATE KINASE 1) (HF=9e-1)

Module size 6 genes

NF 0.24

%ile 23.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.84 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.
0.60 79.7 0.85 Os12g0226700 AK070393.1 - Allyl alcohol dehydrogenase 1e-5 At3g03080 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.40 51.1 0.87 Os03g0574900 AK068853.1 - K+ potassium transporter family protein 1e+0 At5g36805 - O.I. H.G. S.X.
0.17 12.6 0.89 Os05g0586600 AK105697.1 - Plastid sigma factor SIG5 8e-1 At2g33820 MBAC1 O.I. H.G. S.X.
0.14 9.3 0.82 Os03g0254200 CB624264 - Amino acid/polyamine transporter II family protein 6e-1 At4g34340 TAF8 (TBP-ASSOCIATED FACTOR 8) O.I. H.G. S.X.
0.11 6.5 0.83 Os10g0529700 AF402795.1 - - 6e-1 At5g19880 peroxidase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
0.057 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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