CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0646300

Gene name
Homology with Arabidopsis Similar to At2g24610: ATCNGC14 (HF=3e-4)

Module size 9 genes

NF 0.46

%ile 58.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os03g0646300 AK069229.1 - Cyclic nucleotide-gated channel A (Fragment) 3e-4 At2g24610 ATCNGC14 O.I. H.G. S.X.
0.52 69.6 0.97 Os01g0640600 AK069831.1 - LIMONENE cyclase like protein 5e-2 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.47 62.3 0.98 Os12g0141100 AK100364.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 3e-14 At3g56960 PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4) O.I. H.G. S.X.
0.44 58.1 0.96 Os04g0561000 9632.m04569 - MscS Mechanosensitive ion channel family protein 1e-7 At2g17010 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein O.I. H.G. S.X.
0.44 58.1 0.97 Os06g0708400 9634.m04819 - Cyclophilin 3e-19 At4g39220 ATRER1A O.I. H.G. S.X.
0.42 53.9 0.97 Os05g0577200 AK069756.1 - Esterase/lipase/thioesterase domain containingprotein 2e-17 At1g26120 esterase-related O.I. H.G. S.X.
0.39 48.3 0.97 Os07g0205900 AK069835.1 - ARM repeat fold domain containing protein 1e-1 At2g41830 cyclin-related O.I. H.G. S.X.
0.38 46.9 0.98 Os09g0434600 AK071264.1 - Conserved hypothetical protein 1e-3 At5g60700 glycosyltransferase family protein 2 O.I. H.G. S.X.
0.32 36.3 0.96 Os06g0609400 AK109185.1 - Hypothetical protein 6e+0 At1g25054 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage