CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0643900

Gene name
Homology with Arabidopsis Similar to At1g06540: unknown protein (HF=6e-1)

Module size 7 genes

NF 0.09

%ile 7.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.95 Os03g0643900 AK069402.1 - Hypothetical protein 6e-1 At1g06540 unknown protein O.I. H.G. S.X.
0.25 24.1 0.97 Os06g0145200 AK109544.1 - - 5e-3 At1g67840 CSK (CHLOROPLAST SENSOR KINASE) O.I. H.G. S.X.
0.17 12.6 0.96 Os09g0419600 AK109320.1 - Zn-finger, cysteine-rich C6HC domain containingprotein 7e+0 At5g23290 PDF5 (PREFOLDIN 5) O.I. H.G. S.X.
0.15 10.3 0.96 Os03g0148000 AK110468.1 - Protein of unknown function DUF677 family protein 1e-2 At1g60040 AGL49 (AGAMOUS-LIKE 49) O.I. H.G. S.X.
0.07 3.7 0.97 Os06g0277500 NM_196635.1 - - 6e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) O.I. H.G. S.X.
0.05 2.5 0.96 Os02g0772800 9630.m04665 - - 3e+0 At1g69210 unknown protein O.I. H.G. S.X.
0.04 2.0 0.96 Os01g0831900 AK063959.1 - Ammonium transporter 2 (AtAMT2) 9e-1 At3g44805 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
63.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.6 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
20.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.8 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage