CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0643100

Gene name
Homology with Arabidopsis Similar to At5g54940: eukaryotic translation initiation factor SUI1, putative (HF=7e-1)

Module size 18 genes

NF 0.54

%ile 72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.99 Os03g0643100 AK106587.1 - Conserved hypothetical protein 7e-1 At5g54940 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.74 91.4 0.99 Os10g0206700 9638.m01230 - - 1e-2 At1g76185 unknown protein O.I. H.G. S.X.
0.71 89.6 0.99 Os12g0569850 9640.m03712 - - 9e+0 At4g32570 TIFY8 (TIFY DOMAIN PROTEIN 8) O.I. H.G. S.X.
0.70 88.4 0.99 Os07g0291400 AK110971.1 - Conserved hypothetical protein 1e+0 At1g71290 F-box family protein-related O.I. H.G. S.X.
0.68 87.5 0.99 Os12g0434150 AK107176.1 - - 8e-1 At2g27680 aldo/keto reductase family protein O.I. H.G. S.X.
0.62 81.5 0.99 Os11g0417233 NM_184578.1 - - 5e+0 At4g35987 unknown protein O.I. H.G. S.X.
0.60 79.7 0.99 Os05g0111400 9633.m00124 - - 3e-2 At2g41990 unknown protein O.I. H.G. S.X.
0.58 77.0 0.99 Os02g0732000 9630.m04891 - - 5e-1 At1g18600 RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12) O.I. H.G. S.X.
0.56 76.3 0.99 Os01g0522200 9629.m03175 - - 3e+0 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) O.I. H.G. S.X.
0.56 76.3 0.99 Os06g0605300 9634.m03865 - Hypothetical protein 2e-1 At5g63340 unknown protein O.I. H.G. S.X.
0.53 71.3 0.99 Os06g0667200 AY174093.1 - MADS30 3e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) O.I. H.G. S.X.
0.48 63.7 0.99 Os01g0209333 NM_184218.1 - - 5e-1 At1g72240 unknown protein O.I. H.G. S.X.
0.47 62.3 0.99 Os12g0435433 9640.m02368 - - 4e-1 At3g20557 unknown protein O.I. H.G. S.X.
0.47 62.3 0.99 Os05g0283600 AK106958.1 - The start codon is not identified. 6e+0 At5g49015 Expressed protein O.I. H.G. S.X.
0.42 53.9 0.99 Os04g0200600 NM_195699.1 - - 1e-1 At1g32240 KAN2 (KANADI 2) O.I. H.G. S.X.
0.40 51.1 0.99 Os10g0212900 NM_195545.1 - - 4e-2 At3g44440 unknown protein O.I. H.G. S.X.
0.38 46.9 0.99 Os11g0534400 9639.m03000 - - 3e+0 At4g01935 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os05g0232800 NM_193898.1 - HAT dimerisation domain containing protein 9e-2 At5g61500 ATG3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.6	0.99	Os03g0643100	AK106587.1	-	Conserved hypothetical protein	7e-1	At5g54940	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.
0.74	91.4	0.99	Os10g0206700	9638.m01230	-	-	1e-2	At1g76185	unknown protein	O.I.	H.G.	S.X.
0.71	89.6	0.99	Os12g0569850	9640.m03712	-	-	9e+0	At4g32570	TIFY8 (TIFY DOMAIN PROTEIN 8)	O.I.	H.G.	S.X.
0.70	88.4	0.99	Os07g0291400	AK110971.1	-	Conserved hypothetical protein	1e+0	At1g71290	F-box family protein-related	O.I.	H.G.	S.X.
0.68	87.5	0.99	Os12g0434150	AK107176.1	-	-	8e-1	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.62	81.5	0.99	Os11g0417233	NM_184578.1	-	-	5e+0	At4g35987	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.99	Os05g0111400	9633.m00124	-	-	3e-2	At2g41990	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.99	Os02g0732000	9630.m04891	-	-	5e-1	At1g18600	RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os01g0522200	9629.m03175	-	-	3e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os06g0605300	9634.m03865	-	Hypothetical protein	2e-1	At5g63340	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os06g0667200	AY174093.1	-	MADS30	3e-2	At5g51870	AGL71 (AGAMOUS-LIKE 71)	O.I.	H.G.	S.X.
0.48	63.7	0.99	Os01g0209333	NM_184218.1	-	-	5e-1	At1g72240	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os12g0435433	9640.m02368	-	-	4e-1	At3g20557	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os05g0283600	AK106958.1	-	The start codon is not identified.	6e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os04g0200600	NM_195699.1	-	-	1e-1	At1g32240	KAN2 (KANADI 2)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os10g0212900	NM_195545.1	-	-	4e-2	At3g44440	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os11g0534400	9639.m03000	-	-	3e+0	At4g01935	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os05g0232800	NM_193898.1	-	HAT dimerisation domain containing protein	9e-2	At5g61500	ATG3	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.5 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.2	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.5	99.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.0	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os03g0643100
Gene name
Homology with Arabidopsis	Similar to At5g54940: eukaryotic translation initiation factor SUI1, putative (HF=7e-1)
Module size	18 genes
NF	0.54
%ile	72.9

Co-expression analysis

Gene ID Os03g0643100 Gene name Homology with ArabidopsisSimilar to At5g54940: eukaryotic translation initiation factor SUI1, putative (HF=7e-1) Module size 18 genes NF 0.54 %ile 72.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0643100

Gene name
Homology with Arabidopsis Similar to At5g54940: eukaryotic translation initiation factor SUI1, putative (HF=7e-1)

Module size 18 genes

NF 0.54

%ile 72.9

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays