CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0639200

Gene name
Homology with Arabidopsis Similar to At3g21430: - (HF=1e-13)

Module size 12 genes

NF 0.51

%ile 68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 83.8 0.96 Os03g0639200 9631.m04225 - DIRP family protein 1e-13 At3g21430 - O.I. H.G. S.X.
0.78 93.4 0.97 Os01g0698300 AK100582.1 - BED finger domain containing protein 1e+0 At5g20240 PI (PISTILLATA) O.I. H.G. S.X.
0.57 77.0 0.97 Os06g0300800 AK111728.1 - The start codon is not identified. 2e-6 At3g13290 VCR (VARICOSE-RELATED) O.I. H.G. S.X.
0.53 71.3 0.97 Os02g0100200 AK121311.1 - Conserved hypothetical protein 4e-1 At4g31330 unknown protein O.I. H.G. S.X.
0.52 69.6 0.97 Os07g0655500 AK121027.1 - PWWP domain containing protein 2e-1 At2g48160 - O.I. H.G. S.X.
0.48 63.7 0.97 Os02g0192400 AK072184.1 - Zn-finger-like, PHD finger domain containingprotein 4e-1 At2g41710 ovule development protein, putative O.I. H.G. S.X.
0.44 58.1 0.97 Os03g0719500 AK106321.1 - Ser-Thr protein kinase-like protein 8e-99 At1g73450 protein kinase, putative O.I. H.G. S.X.
0.44 58.1 0.97 Os04g0672200 AK099725.1 - Conserved hypothetical protein 2e-3 At2g01340 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os01g0500500 NM_193690.1 - Protein of unknown function DUF632 domaincontaining protein 3e-4 At1g52320 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os09g0567700 AK065913.1 - TUP1-like enhancer of split domain containingprotein 4e-23 At3g44530 HIRA (Arabidopsis homolog of histone chaperone HIRA) O.I. H.G. S.X.
0.37 45.0 0.97 Os09g0515100 AK110315.1 - Bromodomain containing protein 7e-62 At1g05910 cell division cycle protein 48-related / CDC48-related O.I. H.G. S.X.
0.34 40.0 0.97 Os02g0250300 AU095536 - Bromodomain containing protein 1e+0 At1g06230 GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006471 The transfer, from NAD, of ADP-ribose to protein amino acids.
0.054 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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