CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0636800

Gene name
Homology with Arabidopsis Similar to At3g04810: ATNEK2 (NIMA-RELATED KINASE 2) (HF=5e-31)

Module size 7 genes

NF 0.40

%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os03g0636800 AK073129.1 - LSTK-1-like kinase 5e-31 At3g04810 ATNEK2 (NIMA-RELATED KINASE 2) O.I. H.G. S.X.
0.40 51.1 0.95 Os02g0669700 AK064519.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At4g35410 clathrin adaptor complex small chain family protein O.I. H.G. S.X.
0.36 44.0 0.92 Os11g0575600 AK073570.1 - Lipoxygenase L-2 1e-1 At3g22400 LOX5 O.I. H.G. S.X.
0.32 36.3 0.90 Os02g0625900 9630.m03974 - Conserved hypothetical protein 4e+0 At5g47130 Bax inhibitor-1 family / BI-1 family O.I. H.G. S.X.
0.31 34.5 0.94 Os04g0440300 AK071669.1 - Cyclin-like F-box domain containing protein 3e+0 At3g19410 F-box family protein O.I. H.G. S.X.
0.29 31.1 0.90 Os12g0585200 AK120895.1 - Hypothetical protein 2e-1 At5g62770 unknown protein O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0751100 AK070999.1 - Peptidase A1, pepsin family protein 7e-6 At2g17760 aspartyl protease family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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