Co-expression analysis

Gene ID Os03g0624000
Gene name
Homology with ArabidopsisSimilar to At5g42630: ATS (ABERRANT TESTA SHAPE) (HF=7e-12)
Module size 7 genes
NF 0.40
%ile 49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.99Os03g06240009631.m04097-Myb, DNA-binding domain containing protein7e-12At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.6079.71.00Os09g0263832BA000029.2--1e-117Atmg00210-O.I.H.G.S.X.
0.5573.70.99Os12g0525100AK106275.1-Conserved hypothetical protein3e-44Atmg00580-O.I.H.G.S.X.
0.4355.40.99Os12g02524019640.m03901--7e-21Atmg00513-O.I.H.G.S.X.
0.4051.10.99Os12g0523900BA000029.2--2e-26Atmg00516-O.I.H.G.S.X.
0.2727.50.99Os01g0702801NM_192223.1--4e+0At3g53020STV1 (SHORT VALVE1)O.I.H.G.S.X.
0.149.30.99Os03g03265509631.m02095--2e+0At4g26965NADH:ubiquinone oxidoreductase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.199.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.699.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.498.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.098.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.898.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.398.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0481GO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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