Co-expression analysis

Gene ID Os03g0616400
Gene name
Homology with ArabidopsisSimilar to At2g22950: calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) (HF=4e-26)
Module size 10 genes
NF 0.42
%ile 52.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6483.40.89Os03g0616400AK071938.1-Plasma membrane Ca2+-ATPase4e-26At2g22950calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)O.I.H.G.S.X.
0.5978.00.94Os03g0824100AK065308.1-TPR-like domain containing protein3e-1At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)O.I.H.G.S.X.
0.5068.00.92Os08g0191900AK067587.1-TPR-like domain containing protein3e-16At3g59040pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5068.00.93Os02g0539600AK059666.1-Myb, DNA-binding domain containing protein3e-12At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.
0.3846.90.92Os03g0157800AK067375.1-3'-5' exonuclease domain containing protein1e-25At5g359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing proteinO.I.H.G.S.X.
0.3846.90.93Os06g0652000AB120430.1-DNA directed RNA polymerase (EC 2.7.7.6)3e-8At2g24120SCA3 (SCABRA 3)O.I.H.G.S.X.
0.3541.70.92Os03g0108600AK065776.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-5At3g06980DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3338.80.91Os11g0533100AK120240.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-15At3g02060DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3236.30.93Os02g0291500AK062800.1-Conserved hypothetical protein1e-1At4g37920unknown proteinO.I.H.G.S.X.
0.2321.20.93Os02g0507400AK098971.1-Protein of unknown function DUF493 family protein4e-8At1g27385unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.599.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.599.1GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
17.898.9GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
16.098.7GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.298.5GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.298.5GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1431GO:0006816The directed movement of calcium (Ca) ions into, out of, within or between cells.Link to AmiGO
0.0951GO:0006298A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.Link to AmiGO
0.0561GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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