Co-expression analysis

Gene ID Os03g0616300
Gene name
Homology with ArabidopsisSimilar to At1g49980: DNA-directed DNA polymerase/ damaged DNA binding (HF=2e-8)
Module size 7 genes
NF 0.66
%ile 89.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.96Os03g0616300AK102930.1-DNA-directed polymerase kappa2e-8At1g49980DNA-directed DNA polymerase/ damaged DNA bindingO.I.H.G.S.X.
0.8395.80.97Os07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.8094.60.97Os08g0166500AK103907.1-Hypothetical protein5e-2At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.6787.20.97Os04g0528400AK101159.1-Hus1-like protein family protein2e-8At1g17840WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)O.I.H.G.S.X.
0.6079.70.97Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5676.30.97Os08g0520400AK064309.1-Conserved hypothetical protein2e+0At5g23940EMB3009 (embryo defective 3009)O.I.H.G.S.X.
0.5676.30.97Os02g0772300AK071492.1-GCN5-related N-acetyltransferase domain containingprotein3e+0At5g49540unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.198.2GSM154959Leaf_OsRR6-overexpressor_replicate 1GSE6720Gene expression in OsRR6-overexpression lineLink to GEO
10.198.0GSM173093Rice OsSRT1 RNAi transgenic line LM2GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
8.997.8GSM173094Rice OsSRT1 RNAi transgenic line LM3GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
8.497.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.497.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.197.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0441GO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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