CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0610800

Gene name
Homology with Arabidopsis Similar to At1g72416: heat shock protein binding (HF=3e+0)

Module size 7 genes

NF 0.42

%ile 51.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.87 Os03g0610800 AK107194.1 - Serpin 3e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.55 73.7 0.87 Os06g0120200 AK066196.1 - Protein of unknown function DUF594 family protein 3e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) O.I. H.G. S.X.
0.38 46.9 0.87 Os01g0227500 AK120914.1 - Cytochrome P450 family protein 2e-1 At4g33960 unknown protein O.I. H.G. S.X.
0.36 44.0 0.89 Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.35 41.7 0.88 Os12g0438300 AK067669.1 - Disease resistance protein family protein 3e+0 At3g60090 VQ motif-containing protein O.I. H.G. S.X.
0.33 38.8 0.90 Os08g0113500 AK071052.1 - No apical meristem (NAM) protein family protein 1e-3 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) O.I. H.G. S.X.
0.29 31.1 0.89 Os07g0619400 AK062716.1 - Calcium-binding EF-hand domain containing protein 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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