CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0596400

Gene name
Homology with Arabidopsis Similar to At3g54826: - (HF=4e-1)

Module size 7 genes

NF 0.72

%ile 94.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.84 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - O.I. H.G. S.X.
0.80 94.6 0.81 Os02g0196100 AK108729.1 - The start codon is not identified. 1e-7 At3g20880 zinc finger (C2H2 type) protein (WIP4) O.I. H.G. S.X.
0.77 93.1 0.82 Os02g0288600 9630.m01770 - BURP domain containing protein 3e+0 At5g53895 unknown protein O.I. H.G. S.X.
0.77 93.1 0.82 Os03g0284700 AK069841.1 - Hypothetical protein 2e+0 At5g35490 unknown protein O.I. H.G. S.X.
0.71 89.6 0.80 Os07g0190600 AK070975.1 - Nucleic acid-binding OB-fold domain containingprotein 3e-1 At3g05490 RALFL22 (ralf-like 22) O.I. H.G. S.X.
0.71 89.6 0.83 Os03g0308600 AK070495.1 - - 7e+0 At5g46430 60S ribosomal protein L32 (RPL32B) O.I. H.G. S.X.
0.63 82.7 0.80 Os12g0207000 AY551912.1 - Transcription factor 9e-21 At3g58780 SHP1 (SHATTERPROOF 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.3 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.9 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.3 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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