CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0595200

Gene name
Homology with Arabidopsis Similar to At3g51750: unknown protein (HF=3e-1)

Module size 7 genes

NF 0.30

%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.94 Os03g0595200 NM_184956.1 - Conserved hypothetical protein 3e-1 At3g51750 unknown protein O.I. H.G. S.X.
0.43 55.4 0.95 Os07g0124800 AK068837.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 1e-1 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.42 53.9 0.94 Os01g0708300 AK073555.1 - Conserved hypothetical protein 2e-11 At5g11960 unknown protein O.I. H.G. S.X.
0.36 44.0 0.94 Os03g0266700 AK072831.1 - Neutrophil cytosol factor 2 family protein 4e-3 At4g18060 clathrin binding O.I. H.G. S.X.
0.29 31.1 0.95 Os02g0196000 AK068640.1 - Zinc transporter ZIP family protein 1e-8 At3g20870 metal transporter family protein O.I. H.G. S.X.
0.23 21.2 0.94 Os03g0729900 BE040070 - BSD protein (Fragment) 2e+0 At5g27930 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.12 7.2 0.95 Os02g0467700 AK121672.1 - C terminus subunit of GlcA transferase 4e-1 At4g16710 glycosyltransferase family protein 28 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.5 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.6 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.5 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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