Co-expression analysis

Gene ID Os03g0593200
Gene name
Homology with ArabidopsisSimilar to At1g55930: CBS domain-containing protein / transporter associated domain-containing protein (HF=4e-46)
Module size 6 genes
NF 0.22
%ile 20.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.94Os03g05932009631.m03811-Protein of unknown function DUF21 domaincontaining protein4e-46At1g55930CBS domain-containing protein / transporter associated domain-containing proteinO.I.H.G.S.X.
0.4762.30.94Os04g0349600AK070947.1-TPR-like domain containing protein2e-2At3g19160ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)O.I.H.G.S.X.
0.3338.80.95Os04g0466100AK064543.1-Cell division protein FtsH-like protein3e-7At3g02450cell division protein ftsH, putativeO.I.H.G.S.X.
0.2321.20.95Os08g0215200AK072536.1-En/Spm-like transposon proteins family protein1e-1At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.105.70.94Os03g0746400AK070923.1-Protein prenyltransferase domain containingprotein8e-2At1g26560BGLU40 (BETA GLUCOSIDASE 40)O.I.H.G.S.X.
0.105.70.94Os08g0538800AK070462.1-TPR-like domain containing protein3e-1At3g56550pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.999.1GSM304669Control for the stable mutant rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertionLink to GEO
16.598.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.098.7GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.698.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.698.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0006278The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage