Co-expression analysis

Gene ID Os03g0592500
Gene name
Homology with ArabidopsisSimilar to At3g27690: LHCB2.3 (HF=3e-15)
Module size 6 genes
NF 0.75
%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.98Os03g0592500AF061577.1-Photosystem II type II chlorophyll a/b bindingprotein (Fragment)3e-15At3g27690LHCB2.3O.I.H.G.S.X.
0.8094.60.99Os03g0343900AK105813.1-Photosystem II protein PsbX family protein2e-3At2g06520PSBX (photosystem II subunit X)O.I.H.G.S.X.
0.7793.10.99Os04g0457000CB677533--1e+0At3g50250unknown proteinO.I.H.G.S.X.
0.6181.20.99Os01g0773700AK119225.1-Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment)9e-13At5g66005Expressed proteinO.I.H.G.S.X.
0.5978.00.99Os04g0414700AK058848.1-Conserved hypothetical protein3e-5At1g08380PSAO (photosystem I subunit O)O.I.H.G.S.X.
0.5777.00.99Os02g0197600AK106085.1-Chlorophyll a/b-binding protein type III(Fragment)1e-14At1g61520LHCA3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.798.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM159191Young inflorescence (P1, upto 3 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
8.397.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2222GO:0009765Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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